Evidence map›Paper›PMID 22037172›Full record

ArticleNature structural & molecular biology2011

Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter.

Anna Rubio-Cosials, Jasmin F Sidow, Nereida Jiménez-Menéndez, Pablo Fernández-Millán, Julio Montoya, Howard T Jacobs, Miquel Coll, Pau Bernadó, Maria Solà

Erratum issuedAbstract read
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In one paragraph

Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 199 citations in OpenAlex.

  1. TFAM organizes DNA into compact higher order structures.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Mitochondrial function meets oncology: the multifaceted role of TFAM across cancer types.Apoptosis : an international journal on programmed cell death · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Structure and Functions of HMGB3 Protein.International journal of molecular sciences · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Mechanisms and regulation of human mitochondrial transcription.Nature reviews. Molecular cell biology · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Article

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Anna Rubio-CosialsDepartment of Structural Biology, Molecular Biology Institute of Barcelona (CSIC), Barcelona, Spain.
Jasmin F Sidow
Nereida Jiménez-Menéndez
Pablo Fernández-Millán
Julio Montoya
Howard T Jacobs
Miquel Coll
Pau Bernadó
Maria Solà
Institut de Biologia Molecular de Barcelona · ESInstitute for Research in Biomedicine · ESTampere University · FIUniversidad de Zaragoza · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human mitochondrial transcription factor A, TFAM, is essential for mitochondrial DNA packaging and maintenance and also has a crucial role in transcription. Crystallographic analysis of TFAM in complex with an oligonucleotide containing the mitochondrial light strand promoter (LSP) revealed two high-mobility group (HMG) protein domains that, through different DNA recognition properties, intercalate residues at two inverted DNA motifs. This induced an overall DNA bend of ~180°, stabilized by the interdomain linker. This U-turn allows the TFAM C-terminal tail, which recruits the transcription machinery, to approach the initiation site, despite contacting a distant DNA sequence. We also ascertained that structured protein regions contacting DNA in the crystal were highly flexible in solution in the absence of DNA. Our data suggest that TFAM bends LSP to create an optimal DNA arrangement for transcriptional initiation while facilitating DNA compaction elsewhere in the genome.

Indexed as

Nucleic Acid ConformationPromoter Regions, GeneticProtein Structure, TertiaryAmino Acid SequenceCrystallography, X-RayDNADNA-Binding ProteinsHumansMitochondrial ProteinsModels, MolecularMolecular Sequence DataNucleotide MotifsTranscription FactorsDNADNA-Binding ProteinsMitochondrial Proteinsmitochondrial transcription factor ATranscription Factors

Identifiers

PMID22037172
OpenAlexW2099352677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.