Evidence map›Paper›PMID 22037171›Full record

ArticleNature structural & molecular biology2011

The mitochondrial transcription and packaging factor Tfam imposes a U-turn on mitochondrial DNA.

Huu B Ngo, Jens T Kaiser, David C Chan

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 163 papers.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 280 citations in OpenAlex.

  1. Review
  2. Article
  3. TFAM organizes DNA into compact higher order structures.bioRxiv : the preprint server for biology · 2026
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103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Huu B NgoDivision of Biology, California Institute of Technology, Pasadena, California, USA.
Jens T Kaiser
David C Chan
California Institute of Technology · USHoward Hughes Medical Institute · US

Funding

Mitochondrial Fusion: Analysis of Fzo FunctionR01GM062967 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CHAN, DAVID C · 2001 to 2014
$3.7M
Structural and mechanistic studies of mitochondrial fissionR01GM083121 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CHAN, DAVID C · 2007 to 2010
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS GM062967NIGMS NIH HHS GM083121NIGMS NIH HHS R01 GM083121
6 · The paper itself

Abstract

Tfam (transcription factor A, mitochondrial), a DNA-binding protein with tandem high-mobility group (HMG)-box domains, has a central role in the expression, maintenance and organization of the mitochondrial genome. It activates transcription from mitochondrial promoters and organizes the mitochondrial genome into nucleoids. Using X-ray crystallography, we show that human Tfam forces promoter DNA to undergo a U-turn, reversing the direction of the DNA helix. Each HMG-box domain wedges into the DNA minor groove to generate two kinks on one face of the DNA. On the opposite face, a positively charged α-helix serves as a platform to facilitate DNA bending. The structural principles underlying DNA bending converge with those of the unrelated HU family proteins, which have analogous architectural roles in organizing bacterial nucleoids. The functional importance of this extreme DNA bending is promoter specific and seems to be related to the orientation of Tfam on the promoters.

Indexed as

Nucleic Acid ConformationProtein ConformationBase SequenceCrystallography, X-RayDNADNA-Binding ProteinsDNA, MitochondrialGenome, MitochondrialHMG-Box DomainsHumansMitochondrial ProteinsModels, MolecularMolecular Sequence DataPromoter Regions, GeneticTranscription FactorsDNADNA-Binding ProteinsDNA, MitochondrialMitochondrial ProteinsTFAM protein, humanTranscription Factors

Identifiers

PMID22037171
PMCPMC3210390
OpenAlexW2166393810

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.