Evidence map›Paper›PMID 22036949›Full record

ArticleThe EMBO journal2012

Coreceptor gene imprinting governs thymocyte lineage fate.

Stanley Adoro, Thomas McCaughtry, Batu Erman, Amala Alag, François Van Laethem, Jung-Hyun Park, Xuguang Tai, Motoko Kimura, Lie Wang, Alex Grinberg and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  6. Requirement for intron structures in activating theProceedings of the National Academy of Sciences of the United States of America · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Stanley AdoroExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Thomas McCaughtry
Batu Erman
Amala Alag
François Van Laethem
Jung-Hyun Park
Xuguang Tai
Motoko Kimura
Lie Wang
Alex Grinberg
Masato Kubo
Remy Bosselut
Paul Love
Alfred Singer
National Institutes of Health · USNational Cancer Institute · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USSabancı Üniversitesi · TRTokyo University of Science · JP

Funding

Genes and signals controlling mammalian hematopoiesis.ZIAHD001803 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI LOVE, PAUL E · 2009 to 2025
$36.9M
Genetic Analysis of T-cell DifferentiationZIABC010671 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BOSSELUT, REMY · 2009 to 2025
$34.3M
Post-Transcriptional Regulation of Interleukin-7 Receptor ExpressionZIABC011214 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PARK, JUNG-HYUN · 2009 to 2025
$15.9M
MHC-independent T cellsZIABC011116 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2025
$12.3M
T Cell Differentiation and Repertoire SelectionZIABC009273 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2025
$11.6M
Development and function of regulatory T cellsZIABC011112 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2025
$6.8M
T cell survivalZIABC011113 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Role of microRNAs in T cell developmentZIABC011114 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
T cell receptor regulation of cytokine signalingZIABC011117 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Cytokine signaling in developing thymocytes and T cellsZIABC011111 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Specification of T cell function during developmentZIABC011106 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Intramural NIH HHS
6 · The paper itself

Abstract

Immature thymocytes are bipotential cells that are signalled during positive selection to become either helper- or cytotoxic-lineage T cells. By tracking expression of lineage determining transcription factors during positive selection, we now report that the Cd8 coreceptor gene locus co-opts any coreceptor protein encoded within it to induce thymocytes to express the cytotoxic-lineage factor Runx3 and to adopt the cytotoxic-lineage fate, findings we refer to as 'coreceptor gene imprinting'. Specifically, encoding CD4 proteins in the endogenous Cd8 gene locus caused major histocompatibility complex class II-specific thymocytes to express Runx3 during positive selection and to differentiate into CD4(+) cytotoxic-lineage T cells. Our findings further indicate that coreceptor gene imprinting derives from the dynamic regulation of specific cis Cd8 gene enhancer elements by positive selection signals in the thymus. Thus, for coreceptor-dependent thymocytes, lineage fate is determined by Cd4 and Cd8 coreceptor gene loci and not by the specificity of T-cell antigen receptor/coreceptor signalling. This study identifies coreceptor gene imprinting as a critical determinant of lineage fate determination in the thymus.

Indexed as

AnimalsCD4 AntigensCD4-Positive T-LymphocytesCD8 AntigensCD8-Positive T-LymphocytesCell LineageClonal Selection, Antigen-MediatedCore Binding Factor Alpha 3 SubunitCytokinesDNA, RecombinantEnhancer Elements, GeneticGene Knock-In TechniquesGenes, SyntheticLymphopoiesisMiceMice, Inbred C57BLCD4 AntigensCD8 AntigensCore Binding Factor Alpha 3 SubunitCytokinesDNA, RecombinantRunx3 protein, mouseSocs1 protein, mouseSuppressor of Cytokine Signaling 1 ProteinSuppressor of Cytokine Signaling ProteinsTranscription FactorsZbtb7b protein, mouse

Identifiers

PMID22036949
PMCPMC3261554
OpenAlexW2171179851

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.