Evidence map›Paper›PMID 22036881›Full record

ArticleNature protocols2011

Measurement of protein farnesylation and geranylgeranylation in vitro, in cultured cells and in biopsies, and the effects of prenyl transferase inhibitors.

Norbert Berndt, Saïd M Sebti

Abstract read
In one paragraph

Article in Nature protocols, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
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  6. Article
  7. FGTI-2734 Inhibits ERK Reactivation to Overcome Sotorasib Resistance in KRAS G12C Lung Cancer.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Article
  8. Geranylgeranylated SCFCell reports · 2024
    Article
  9. Geranylgeranylated-SCFbioRxiv : the preprint server for biology · 2024
    Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Norbert BerndtDepartment of Drug Discovery, Moffitt Cancer Center, Tampa, Florida, USA.
Saïd M Sebti
Moffitt Cancer Center · USUniversity of South Florida · US

Funding

VALIDATION OF INHIBITORS OF RHO GTPASES FOR CANCER TREATMENTU19CA067771 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI LAWRENCE, NICOLAS · 1995 to 2009
$8.9M
TARGETED INTERVENTION OF BREAST ONCOGENIC PATHWAYSR01CA098473 · NCI · H. LEE MOFFITT CANCER CTR &RES INST · PI SEBTI, SAID M · 2003 to 2014
$3.5M
NCI NIH HHS CA067771NCI NIH HHS CA098473NCI NIH HHS R01 CA098473NCI NIH HHS U19 CA067771
6 · The paper itself

Abstract

The importance of the post-translational lipid modifications farnesylation and geranylgeranylation in protein localization and function coupled with the critical role of prenylated proteins in malignant transformation has prompted interest in their biology and the development of farnesyl transferase and geranylgeranyl transferase inhibitors (FTIs and GGTIs) as chemical probes and anticancer agents. The ability to measure protein prenylation before and after FTI and GGTI treatment is important to understanding and interpreting the effects of these agents on signal transduction pathways and cellular phenotypes, as well as to the use of prenylation as a biomarker. Here we describe protocols to measure the degree of protein prenylation by farnesyl transferase or geranylgeranyl transferase in vitro, in cultured cells and in tumors from animals and humans. The assays use [(3)H]farnesyl diphosphate and [(3)H]geranylgeranyl diphosphate, electrophoretic mobility shift, membrane association using subcellular fractionation or immunofluorescence of intact cells, [(3)H]mevalonic acid labeling, followed by immunoprecipitation and SDS-PAGE, and in vitro transcription, translation and prenylation in reticulocyte lysates. These protocols require from 1 d (enzyme assays) to up to 3 months (autoradiography of [(3)H]-labeled proteins).

Indexed as

AnimalsBiopsyCells, CulturedFarnesyltranstransferaseGeranylgeranyl-Diphosphate GeranylgeranyltransferaseHumansLipid MetabolismMammalsProtein PrenylationProtein TransportFarnesyltranstransferaseGeranylgeranyl-Diphosphate Geranylgeranyltransferase

Identifiers

PMID22036881
PMCPMC4035200
OpenAlexW2026776421

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.