Evidence map›Paper›PMID 22036671›Full record

ArticleVirology2011

The interdomain linker region of HIV-1 capsid protein is a critical determinant of proper core assembly and stability.

Jiyang Jiang, Sherimay D Ablan, Suchitra Derebail, Kamil Hercík, Ferri Soheilian, James A Thomas, Shixing Tang, Indira Hewlett, Kunio Nagashima, Robert J Gorelick and 2 more

Abstract read
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jiyang JiangSection on Viral Gene Regulation, Program in Genomics of Differentiation, Eunice Kennedy Shriver National Institute of Child Health, National Institutes of Health, Bethesda, MD 20892-2780, USA.
Sherimay D Ablan
Suchitra Derebail
Kamil Hercík
Ferri Soheilian
James A Thomas
Shixing Tang
Indira Hewlett
Kunio Nagashima
Robert J Gorelick
Eric O Freed
Judith G Levin

Funding

Molecular Genetics Of Mammalian Retrovirus ReplicationZIAHD000069 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI LEVIN, JUDITH G · 2009 to 2015
$7.2M
Retroviral Gag Trafficking, Env Incorporation, and Virus AssemblyZIABC010775 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI FREED, ERIC · 2009 to 2015
$4.6M
CCR NIH HHS HHSN261200800001CIntramural NIH HHS ZIA HD000069NCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

The HIV-1 capsid protein consists of two independently folded domains connected by a flexible peptide linker (residues 146-150), the function of which remains to be defined. To investigate the role of this region in virus replication, we made alanine or leucine substitutions in each linker residue and two flanking residues. Three classes of mutants were identified: (i) S146A and T148A behave like wild type (WT); (ii) Y145A, I150A, and L151A are noninfectious, assemble unstable cores with aberrant morphology, and synthesize almost no viral DNA; and (iii) P147L and S149A display a poorly infectious, attenuated phenotype. Infectivity of P147L and S149A is rescued specifically by pseudotyping with vesicular stomatitis virus envelope glycoprotein. Moreover, despite having unstable cores, these mutants assemble WT-like structures and synthesize viral DNA, although less efficiently than WT. Collectively, these findings demonstrate that the linker region is essential for proper assembly and stability of cores and efficient replication.

Indexed as

Virus AssemblyAmino Acid SubstitutionAnimalsAotidaeCapsid Proteinsgag Gene Products, Human Immunodeficiency VirusHEK293 CellsHeLa CellsHIV-1HumansMembrane GlycoproteinsProtein Structure, TertiaryViral Core ProteinsViral Envelope ProteinsVirus ReplicationCapsid Proteinsgag Gene Products, Human Immunodeficiency VirusG protein, vesicular stomatitis virusMembrane GlycoproteinsViral Core ProteinsViral Envelope Proteins

Identifiers

PMID22036671
PMCPMC3573886

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.