Evidence map›Paper›PMID 22035794›Full record

ArticleChemistry & biology2011

Identification of a eukaryotic reductive dechlorinase and characterization of its mechanism of action on its natural substrate.

Francisco Velazquez, Sew Yu Peak-Chew, Israel S Fernández, Christopher S Neumann, Robert R Kay

Abstract read
In one paragraph

Article in Chemistry & biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Misregulation of bromotyrosine compromises fertility in maleProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Generating polyketide diversity inProceedings. Biological sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Francisco VelazquezLaboratory of Molecular Biology, Medical Research Council, Cambridge CB2 0QH, UK. fv@mrc-lmb.cam.ac.uk
Sew Yu Peak-Chew
Israel S Fernández
Christopher S Neumann
Robert R Kay

Funding

Medical Research Council MC_U105115237
6 · The paper itself

Abstract

Chlorinated compounds are important environmental pollutants whose biodegradation may be limited by inefficient dechlorinating enzymes. Dictyostelium amoebae produce a chlorinated alkyl phenone called DIF which induces stalk cell differentiation during their multicellular development. Here we describe the identification of DIF dechlorinase. DIF dechlorinase is active when expressed in bacteria, and activity is lost from Dictyostelium cells when its gene, drcA, is knocked out. It has a K(m) for DIF of 88 nM and K(cat) of 6.7 s(-1). DrcA is related to glutathione S-transferases, but with a key asparagine-to-cysteine substitution in the catalytic pocket. When this change is reversed, the enzyme reverts to a glutathione S-transferase, thus suggesting a catalytic mechanism. DrcA offers new possibilities for the rational design of bioremediation strategies.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAsparagineBase SequenceCatalytic DomainConserved SequenceCysteineDictyosteliumGene Knockout TechniquesGlutathioneGlutathione TransferaseHexanesHexanonesHydrocarbons, ChlorinatedKineticsLyasesAsparagineCysteineDIF-1 3(5)-dechlorinaseDifferentiation-inducing factor-1, DictyosteliumGlutathioneGlutathione TransferaseHexanesHexanonesHydrocarbons, ChlorinatedLyasesOxidoreductasesProtozoan Proteins

Identifiers

PMID22035794
PMCPMC3205185

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.