ArticlePlant physiology2011
A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.
Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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35 citing papers in PubMed.
- Deciphering carbohydrate metabolism during wheat grain development via integrated transcriptome and proteome dynamics.Molecular biology reports · 2020Article
- Molecular Markers Associated with Agro-Physiological Traits under Terminal Drought Conditions in Bread Wheat.International journal of molecular sciences · 2020Article
- Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Transcriptome Analysis Identifies a 140 kb Region of Chromosome 3B Containing Genes Specific to Fusarium Head Blight Resistance in Wheat.International journal of molecular sciences · 2018Article
- Genome-wide identification, classification, evolutionary analysis and gene expression patterns of the protein kinase gene family in wheat and Aegilops tauschii.Plant molecular biology · 2017Article
- A comparative gene analysis with rice identified orthologous group II HKT genes and their association with Na(+) concentration in bread wheat.BMC plant biology · 2016Article
- A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.BMC genomics · 2015Article
- The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.BMC genomics · 2015Article
- High-throughput physical map anchoring via BAC-pool sequencing.BMC plant biology · 2015Article
- Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome.Genome biology · 2015Article
- RulNet: A Web-Oriented Platform for Regulatory Network Inference, Application to Wheat -Omics Data.PloS one · 2015Article
- Extensive pericentric rearrangements in the bread wheat (Triticum aestivum L.) genotype "Chinese Spring" revealed from chromosome shotgun sequence data.Genome biology and evolution · 2014Article
- Evolutionary history of Methyltransferase 1 genes in hexaploid wheat.BMC genomics · 2014Article
- Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Fine mapping of LrSV2, a race-specific adult plant leaf rust resistance gene on wheat chromosome 3BS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Organization and evolution of transposable elements along the bread wheat chromosome 3B.Genome biology · 2014Article
- The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution.Genome biology · 2013Article
- Unlocking Triticeae genomics to sustainably feed the future.Plant & cell physiology · 2013Review
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14 authors.
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Abstract
To improve our understanding of the organization and regulation of the wheat (Triticum aestivum) gene space, we established a transcription map of a wheat chromosome (3B) by hybridizing a newly developed wheat expression microarray with bacterial artificial chromosome pools from a new version of the 3B physical map as well as with cDNA probes derived from 15 RNA samples. Mapping data for almost 3,000 genes showed that the gene space spans the whole chromosome 3B with a 2-fold increase of gene density toward the telomeres due to an increase in the number of genes in islands. Comparative analyses with rice (Oryza sativa) and Brachypodium distachyon revealed that these gene islands are composed mainly of genes likely originating from interchromosomal gene duplications. Gene Ontology and expression profile analyses for the 3,000 genes located along the chromosome revealed that the gene islands are enriched significantly in genes sharing the same function or expression profile, thereby suggesting that genes in islands acquired shared regulation during evolution. Only a small fraction of these clusters of cofunctional and coexpressed genes was conserved with rice and B. distachyon, indicating a recent origin. Finally, genes with the same expression profiles in remote islands (coregulation islands) were identified suggesting long-distance regulation of gene expression along the chromosomes in wheat.
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