ArticleBMC plant biology2011
Association analysis of frost tolerance in rye using candidate genes and phenotypic data from controlled, semi-controlled, and field phenotyping platforms.
Article in BMC plant biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed, 66 citations in OpenAlex.
- Influence of long-term nutrient deficiency on pollen and anther morphological traits in rye.Journal of experimental botany · 2026Article
- Time-course transcriptome and WGCNA reveal tissue-specific genes in 'White BK-1' rye during early cold acclimation stage.Frontiers in plant science · 2026Article
- Integrative Physiological and Transcriptomic Analysis Reveals Metabolic Adaptation and Cold-Tolerance Marker Development in Winter Rye Under Low-Temperature Stress.Plants (Basel, Switzerland) · 2025Article
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- TheCells · 2023Review
- Genome-wide discovery of di-nucleotide SSR markers based on whole genome re-sequencing data of Cicer arietinum L. and Cicer reticulatum Ladiz.Scientific reports · 2023Article
- Association mapping of autumn-seeded rye (Secale cereale L.) reveals genetic linkages between genes controlling winter hardiness and plant development.Scientific reports · 2022Article
- Quantitative trait loci and candidate genes associated with freezing tolerance of winter triticale (× Triticosecale Wittmack).Journal of applied genetics · 2022Article
- Genome-wide association mapping for root traits associated with frost tolerance in faba beans using KASP-SNP markers.Frontiers in genetics · 2022Article
- The Relationships between Plant Developmental Traits and Winter Field Survival in Rye (Plants (Basel, Switzerland) · 2021Article
- Advances and Challenges for QTL Analysis and GWAS in the Plant-Breeding of High-Yielding: A Focus on Rapeseed.Biomolecules · 2021Review
- Article
- Genome-wide association study identifies favorable SNP alleles and candidate genes for frost tolerance in pea.BMC genomics · 2020Article
- Article
- Exploring new alleles for frost tolerance in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Quantitative trait loci from identification to exploitation for crop improvement.Plant cell reports · 2017Review
- Article
- ScBx gene based association analysis of hydroxamate content in rye (Secale cereale L.).Journal of applied genetics · 2017Article
- Genome Analysis Identified Novel Candidate Genes for Ascochyta Blight Resistance in Chickpea Using Whole Genome Re-sequencing Data.Frontiers in plant science · 2017Article
- Association analysis of grapevine bunch traits using a comprehensive approach.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundFrost is an important abiotic stress that limits cereal production in the temperate zone. As the most frost tolerant small grain cereal, rye (Secale cereale L.) is an ideal cereal model for investigating the genetic basis of frost tolerance (FT), a complex trait with polygenic inheritance. Using 201 genotypes from five Eastern and Middle European winter rye populations, this study reports a multi-platform candidate gene-based association analysis in rye using 161 single nucleotide polymorphisms (SNPs) and nine insertion-deletion (Indel) polymorphisms previously identified from twelve candidate genes with a putative role in the frost responsive network.
resultsPhenotypic data analyses of FT in three different phenotyping platforms, controlled, semi-controlled and field, revealed significant genetic variations in the plant material under study. Statistically significant (P < 0.05) associations between FT and SNPs/haplotypes of candidate genes were identified. Two SNPs in ScCbf15 and one in ScCbf12, all leading to amino acid exchanges, were significantly associated with FT over all three phenotyping platforms. Distribution of SNP effect sizes expressed as percentage of the genetic variance explained by individual SNPs was highly skewed towards zero with a few SNPs obtaining large effects. Two-way epistasis was found between 14 pairs of candidate genes. Relatively low to medium empirical correlations of SNP-FT associations were observed across the three platforms underlining the need for multi-level experimentation for dissecting complex associations between genotypes and FT in rye.
conclusionsCandidate gene based-association studies are a powerful tool for investigating the genetic basis of FT in rye. Results of this study support the findings of bi-parental linkage mapping and expression studies that the Cbf gene family plays an essential role in FT.
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