Evidence map›Paper›PMID 22032296›Full record

ArticleBMC genomics2011

Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients.

Guanggan Hu, Joyce Wang, Jaehyuk Choi, Won Hee Jung, Iris Liu, Anastasia P Litvintseva, Tihana Bicanic, Rajeev Aurora, Thomas G Mitchell, John R Perfect and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 84 citations in OpenAlex.

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  12. ExploringJournal of fungi (Basel, Switzerland) · 2022
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  18. Transposon mobilization in the human fungal pathogenProceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Guanggan HuThe Michael Smith Laboratories, Department of Microbiology and Immunology, and Faculty of Land and Food Systems, University of British Columbia, Vancouver, B.C. V6T 1Z4, Canada.
Joyce Wang
Jaehyuk Choi
Won Hee Jung
Iris Liu
Anastasia P Litvintseva
Tihana Bicanic
Rajeev Aurora
Thomas G Mitchell
John R Perfect
James W Kronstad
University of British Columbia · CACanada's Michael Smith Genome Sciences Centre · CADuke Medical Center · USChung-Ang University · KRDuke University · USSaint Louis University · USSt George's, University of London · GB

Funding

Pathobiology of C. neoformans in the Central Nervous SystemR01AI073896 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2008 to 2018
$4.4M
Evolution of Cryptococcus neoformans Strains from Patients with HIV/AIDSR01AI093257 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2011 to 2022
$3.8M
STUDIES OF CRYPTOCOCCUS NEOFORMANTS ASSOCIATED WITH AIDSR01AI025783 · NIAID · DUKE UNIVERSITY · PI MITCHELL, THOMAS G. · 1987 to 2010
$2.1M
Chromosome copy number variation and AIDS-associated cryptococcosisR21AI080279 · NIAID · UNIVERSITY OF BRITISH COLUMBIA · PI KRONSTAD, JAMES W · 2009 to 2010
$295k
NIAID NIH HHS 5R01 AI25783NIAID NIH HHS R01 AI093257NIAID NIH HHS R01 AI73896NIAID NIH HHS R21AI080279Wellcome Trust
6 · The paper itself

Abstract

backgroundThe adaptation of pathogenic fungi to the host environment via large-scale genomic changes is a poorly characterized phenomenon. Cryptococcus neoformans is the leading cause of fungal meningoencephalitis in HIV/AIDS patients, and we recently discovered clinical strains of the fungus that are disomic for chromosome 13. Here, we examined the genome plasticity and phenotypes of monosomic and disomic strains, and compared their virulence in a mouse model of cryptococcosis

resultsIn an initial set of strains, melanin production was correlated with monosomy at chromosome 13, and disomic variants were less melanized and attenuated for virulence in mice. After growth in culture or passage through mice, subsequent strains were identified that varied in melanin formation and exhibited copy number changes for other chromosomes. The correlation between melanin and disomy at chromosome 13 was observed for some but not all strains. A survey of environmental and clinical isolates maintained in culture revealed few occurrences of disomic chromosomes. However, an examination of isolates that were freshly collected from the cerebrospinal fluid of AIDS patients and minimally cultured provided evidence for infections with multiple strains and copy number variation.

conclusionsOverall, these results suggest that the genome of C. neoformans exhibits a greater degree of plasticity than previously appreciated. Furthermore, the expression of an essential virulence factor and the severity of disease are associated with genome variation. The occurrence of chromosomal variation in isolates from AIDS patients, combined with the observed influence of disomy on virulence, indicates that genome plasticity may have clinical relevance.

Indexed as

DNA Copy Number VariationsAIDS-Related Opportunistic InfectionsAnimalsChromosomes, FungalComparative Genomic HybridizationCryptococcosisCryptococcus neoformansFemaleHumansMelaninsMiceMice, Inbred BALB CVirulenceVirulence FactorsMelaninsVirulence Factors

Identifiers

PMID22032296
PMCPMC3221739
OpenAlexW2143075801

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.