Evidence map›Paper›PMID 22030395›Full record

ArticleThe Journal of biological chemistry2011

Lipid phenotype of two distinct subpopulations of Mycobacterium bovis Bacillus Calmette-Guerin Tokyo 172 substrain.

Takashi Naka, Shinji Maeda, Mamiko Niki, Naoya Ohara, Saburo Yamamoto, Ikuya Yano, Jun-Ichi Maeyama, Hisashi Ogura, Kazuo Kobayashi, Nagatoshi Fujiwara

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Recombinant BCG Overexpressing phoP-phoR Confers Enhanced Protection against Tuberculosis.Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. BCG vaccine in Korea.Clinical and experimental vaccine research · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Takashi NakaDepartment of Bacteriology, Osaka City University Graduate School of Medicine, Osaka 545-8585, Japan; MBR Co. Ltd., Osaka 560-8552, Japan.
Shinji MaedaMolecular Epidemiology Division, Mycobacterium Reference Center, The Research Institute of Tuberculosis, Japan Anti-Tuberculosis Association, Tokyo 204-8533, Japan.
Mamiko NikiDepartment of Bacteriology, Osaka City University Graduate School of Medicine, Osaka 545-8585, Japan.
Naoya OharaDepartment of Oral Microbiology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama 700-8558, Japan.
Saburo YamamotoJapan BCG Laboratory, Tokyo 204-0022, Japan.
Ikuya YanoJapan BCG Laboratory, Tokyo 204-0022, Japan.
Jun-Ichi MaeyamaDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.
Hisashi OguraDepartment of Bacteriology, Osaka City University Graduate School of Medicine, Osaka 545-8585, Japan; Department of Virology, Osaka City University Graduate School of Medicine, Osaka 545-8585, Japan.
Kazuo KobayashiDepartment of Immunology, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.
Nagatoshi FujiwaraDepartment of Bacteriology, Osaka City University Graduate School of Medicine, Osaka 545-8585, Japan. Electronic address: fujiwara@med.osaka-cu.ac.jp.
Osaka City University · JPJapan BCG Laboratory · JPNational Institute of Infectious Diseases · JPJapan Anti Tuberculosis Association · JPOkayama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus Calmette-Guérin (BCG) Tokyo 172 is a predominant World Health Organization Reference Reagent for the BCG vaccine. Recently, the BCG Tokyo 172 substrain was reported to consist of two subpopulations with different colony morphologies, smooth and rough. Smooth colonies had a characteristic 22-bp deletion in Rv3405c of the region of difference (RD) 16 (type I), and rough colonies were complete in this region (type II). We hypothesized that the morphological difference is related to lipid phenotype and affects their antigenicity. We determined the lipid compositions and biosynthesis of types I and II. Scanning electron microscopy showed that type I was 1.5 times longer than type II. Phenolic glycolipid (PGL) and phthiocerol dimycocerosate (PDIM) were found only in type I. Although it has been reported that the RD16 is involved in the expression of PGL, type II did not possess PGL/PDIM. We examined the ppsA-E gene responsible for PGL/PDIM biosynthesis and found that the existence of PGL/PDIM in types I and II is caused by a ppsA gene mutation not regulated by the RD16. PGL suppressed the host recognition of total lipids via Toll-like receptor 2, and this suggests that PGL is antigenic and involved in host responses, acting as a cell wall component. This is the first report to show the difference between lipid phenotypes of types I and II. It is important to clarify the heterogeneity of BCG vaccine substrains to discuss and evaluate the quality, safety, and efficacy of the BCG vaccine.

Indexed as

AnimalsBCG VaccineCarbohydratesChromatography, Thin LayerEscherichia coliEscherichia coli ProteinsFatty AcidsGenotypeGlycolipidsMiceMice, Inbred C57BLMice, KnockoutModels, GeneticMolecular Sequence DataMutationMycobacterium bovisBCG VaccineCarbohydratesEscherichia coli ProteinsFatty AcidsGlycolipidsMycolic AcidsppsA protein, E coliPyruvate Synthase

Identifiers

PMID22030395
PMCPMC3243544
OpenAlexW2038747717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.