Evidence map›Paper›PMID 22028939›Full record

ArticlePLoS neglected tropical diseases2011

Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA.

Wei Li, Ashesh A Saraiya, Ching C Wang

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Exploration ofParasitology · 2024
    Review
  5. The Exosome-like Vesicles ofInternational journal of molecular sciences · 2023
    Article
  6. Emerging Functions for snoRNAs and snoRNA-Derived Fragments.International journal of molecular sciences · 2021
    Review
  7. Review
  8. Functional diversity of small nucleolar RNAs.Nucleic acids research · 2020
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  17. Update on non-canonical microRNAs.Biomolecular concepts · 2014
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Wei LiDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California, United States of America.
Ashesh A Saraiya
Ching C Wang
University of California, San Francisco · US

Funding

Translation Regulation in Giardia lambliaR01AI030475 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WANG, CHING CHUNG · 1991 to 2011
$3.9M
NIAID NIH HHS R01 AI030475NIAID NIH HHS R01 AI-30475
6 · The paper itself

Abstract

Two core microRNA (miRNA) pathway proteins, Dicer and Argonaute, are found in Giardia lamblia, a deeply branching parasitic protozoan. There are, however, no apparent homologues of Drosha or Exportin5 in the genome. Here, we report a 26 nucleotide (nt) RNA derived from a 106 nt Box C/D snoRNA, GlsR2. This small RNA, designated miR5, localizes to the 3' end of GlsR2 and has a 75 nt hairpin precursor. GlsR2 is processed by the Dicer from Giardia (GlDcr) and generated miR5. Immunoprecipitation of the Argonaute from Giardia (GlAgo) brought down miR5. When a Renilla Luciferase transcript with a 26 nt miR5 antisense sequence at the 3'-untranslated region (3' UTR) was introduced into Giardia trophozoites, Luciferase expression was reduced ∼25% when synthetic miR5 was also introduced. The Luciferase mRNA level remained, however, unchanged, suggesting translation repression by miR5. This inhibition was fully reversed by introducing also a 2'-O-methylated antisense inhibitor of miR5, suggesting that miR5 acts by interacting specifically with the antisense sequence in the mRNA. A partial antisense knock down of GlDcr or GlAgo in Giardia indicated that the former is needed for miR5 biogenesis whereas the latter is required for miR5-mediated translational repression. Potential targets for miR5 with canonical seed sequences were predicted bioinformatically near the stop codon of Giardia mRNAs. Four out of the 21 most likely targets were tested in the Luciferase reporter assay. miR5 was found to inhibit Luciferase expression (∼20%) of transcripts carrying these potential target sites, indicating that snoRNA-derived miRNA can regulate the expression of multiple genes in Giardia.

Indexed as

Gene Expression RegulationArgonaute ProteinsGenes, ReporterGiardia lambliaImmunoprecipitationLuciferasesMicroRNAsRibonuclease IIIRNA Processing, Post-TranscriptionalRNA, ProtozoanRNA, Small NucleolarArgonaute ProteinsLuciferasesMicroRNAsRibonuclease IIIRNA, ProtozoanRNA, Small Nucleolar

Identifiers

PMID22028939
PMCPMC3196473
OpenAlexW2086188781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.