Evidence map›Paper›PMID 22028771›Full record

ArticlePloS one2011

Computer simulations of cell sorting due to differential adhesion.

Ying Zhang, Gilberto L Thomas, Maciej Swat, Abbas Shirinifard, James A Glazier

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
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  7. Cellular segregation in cocultures is driven by differential adhesion and contractility on distinct timescales.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Adhesion-Based Self-Organization in Tissue Patterning.Annual review of cell and developmental biology · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Tuning intercellular adhesion with membrane-anchored oligonucleotides.Journal of the Royal Society, Interface · 2019
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ying ZhangCancer and Developmental Biology Laboratory, National Cancer Institute, Frederick, Maryland, United States of America. zhangy14@mail.nih.gov
Gilberto L Thomas
Maciej Swat
Abbas Shirinifard
James A Glazier
Indiana University Bloomington · USNational Cancer Institute · USUniversidade Federal do Rio Grande do Sul · BR

Funding

MSM - Multiscale Studies of Segmentation in Vertebrate *R01GM076692 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI GLAZIER, JAMES ALEXANDER, STERN, CLAUDIO D · 2005 to 2015
$5.5M
Development and Improvement of Tissue Simulation ToolkitR01GM077138 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI D'SOUZA, ROSHAN M, GLAZIER, JAMES ALEXANDER · 2007 to 2015
$4.0M
NIGMS NIH HHS R01 GM076692NIGMS NIH HHS R01 GM077138NIGMS NIH HHS R01-GM077138NIGMS NIH HHS R01-GM76692
6 · The paper itself

Abstract

The actions of cell adhesion molecules, in particular, cadherins during embryonic development and morphogenesis more generally, regulate many aspects of cellular interactions, regulation and signaling. Often, a gradient of cadherin expression levels drives collective and relative cell motions generating macroscopic cell sorting. Computer simulations of cell sorting have focused on the interactions of cells with only a few discrete adhesion levels between cells, ignoring biologically observed continuous variations in expression levels and possible nonlinearities in molecular binding. In this paper, we present three models relating the surface density of cadherins to the net intercellular adhesion and interfacial tension for both discrete and continuous levels of cadherin expression. We then use then the Glazier-Graner-Hogeweg (GGH) model to investigate how variations in the distribution of the number of cadherins per cell and in the choice of binding model affect cell sorting. We find that an aggregate with a continuous variation in the level of a single type of cadherin molecule sorts more slowly than one with two levels. The rate of sorting increases strongly with the interfacial tension, which depends both on the maximum difference in number of cadherins per cell and on the binding model. Our approach helps connect signaling at the molecular level to tissue-level morphogenesis.

Indexed as

Cell MovementComputer SimulationCadherinsCell AdhesionCell MembraneKineticsModels, BiologicalThermodynamicsCadherins

Identifiers

PMID22028771
PMCPMC3196507
OpenAlexW2030944887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.