Evidence map›Paper›PMID 22028326›Full record

ReviewDisease models & mechanisms2012

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice.

Paul N Schofield, Peter Vogel, Georgios V Gkoutos, John P Sundberg

Open access · goldAbstract readReview
In one paragraph

Review in Disease models & mechanisms, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. High-Throughput, Multi-Image Cryohistology of Mineralized Tissues.Journal of visualized experiments : JoVE · 2016
    Article
  10. Mouse genome-wide association study identifies polymorphisms on chromosomes 4, 11, and 15 for age-related cardiac fibrosis.Mammalian genome : official journal of the International Mammalian Genome Society · 2016
    Article
  11. Review
  12. Article
  13. Excavating the Genome: Large-Scale Mutagenesis Screening for the Discovery of New Mouse Models.The journal of investigative dermatology. Symposium proceedings · 2015
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Paul N SchofieldDepartment of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3EG, UK. ps@mole.bio.cam.ac.uk
Peter Vogel
Georgios V Gkoutos
John P Sundberg
University of Cambridge · GBJackson Laboratory · USSt. Jude Children's Research Hospital · US

Funding

Translational CoreP30AG038070 · NIA · JACKSON LABORATORY · PI Gary A Churchill · 2010 to 2026
$19.3M
Mouse Models of Human Cancer DatabaseR01CA089713 · NCI · JACKSON LABORATORY · PI BULT, CAROL J · 2002 to 2025
$17.5M
Shock Center for Aging Research at The Jackson Laborato*P30AG025707 · NIA · JACKSON LABORATORY · PI PAIGEN, BEVERLY J · 2005 to 2009
$4.1M
An Ontology of Qualities for the Annotation of Biomedical DataR01HG004838 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI LEWIS, SUZANNA E · 2009 to 2012
$1.9M
Genetics of Alopecia Areata in the C3H/HeJ MouseR01AR056635 · NIAMS · JACKSON LABORATORY · PI SUNDBERG, JOHN PAUL · 2010 to 2014
$1.9M
Biotechnology and Biological Sciences Research Council BBG0043581NCI NIH HHS CA89713NCI NIH HHS R01 CA089713NHGRI NIH HHS R01 HG004838NHGRI NIH HHS R01 HG004838-02NIAMS NIH HHS AR056635NIAMS NIH HHS R01 AR056635NIA NIH HHS AG-25707NIA NIH HHS P30 AG025707NIA NIH HHS P30 AG038070
6 · The paper itself

Abstract

Recent advances in gene knockout techniques and the in vivo analysis of mutant mice, together with the advent of large-scale projects for systematic mouse mutagenesis and genome-wide phenotyping, have allowed the creation of platforms for the most complete and systematic analysis of gene function ever undertaken in a vertebrate. The development of high-throughput phenotyping pipelines for these and other large-scale projects allows investigators to search and integrate large amounts of directly comparable phenotype data from many mutants, on a genomic scale, to help develop and test new hypotheses about the origins of disease and the normal functions of genes in the organism. Histopathology has a venerable history in the understanding of the pathobiology of human and animal disease, and presents complementary advantages and challenges to in vivo phenotyping. In this review, we present evidence for the unique contribution that histopathology can make to a large-scale phenotyping effort, using examples from past and current programmes at Lexicon Pharmaceuticals and The Jackson Laboratory, and critically assess the role of histopathology analysis in high-throughput phenotyping pipelines.

Indexed as

AnimalsDrug DiscoveryGenomeHigh-Throughput Screening AssaysHumansMiceMice, Mutant StrainsPathologyPhenotype

Identifiers

PMID22028326
PMCPMC3255539
OpenAlexW2151049342

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.