Evidence map›Paper›PMID 22027585›Full record

ArticleJournal of hepatology2012

Single nucleotide polymorphism upstream of interleukin 28B associated with phase 1 and phase 2 of early viral kinetics in patients infected with HCV genotype 1.

Charles D Howell, Alexis Gorden, Kathleen A Ryan, Alexander J Thompson, Chadi Ibrahim, Michael Fried, Nezam H Afdhal, John G McHutchison, Kevin V Shianna, David B Goldstein and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of hepatology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 4 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 4 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Pooled it
  4. Pooled it
  5. Article
  6. Article
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  8. Genetic variants at the IFNL3 locus and their association with hepatitis C virus infections reveal novel insights into host-virus interactions.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2014
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Charles D HowellUniversity of Maryland School of Medicine, Program in Genetics and Genomic Medicine, Baltimore, MD, USA. chowell@medicine.umaryland.edu
Alexis Gorden
Kathleen A Ryan
Alexander J Thompson
Chadi Ibrahim
Michael Fried
Nezam H Afdhal
John G McHutchison
Kevin V Shianna
David B Goldstein
Alan R Shuldiner
Braxton D Mitchell
University of Maryland, Baltimore · USClinical Research Institute · USDuke University · USBeth Israel Deaconess Medical Center · USUniversity of North Carolina at Chapel Hill · US

Funding

National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
ZINC GLUCONATE GLYCINE LOZENGES &VITAMIN C EFFECTS ON COMMON COLDM01RR000042 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ORAL, ELIF ARIOGLU · 1985 to 2007
$40.8M
Zonisamide in Patients with Neuropathic Pain Associated with Diabetic NeuropathyM01RR000046 · NCRR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MUENZER, JOSEPH J. · 1985 to 2008
$38.5M
ZOLEDRONIC ACID IN PROSTATE CANCERM01RR000645 · NCRR · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI COLTEN, HARVEY R · 1985 to 2006
$27.0M
ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
Zonulin Antibodies in Intestinal Permeabilitiy in IDDMM01RR016500 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI GAROFALO, MICHAEL CURTIS · 2002 to 2009
$20.2M
Study of Viral Resistance to Antiviral Therapy of Chron*U01DK060329 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BELLE, STEVEN H. · 2001 to 2005
$8.0M
Research Training in Gastroenterology and HepatologyT32DK067872 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI RAUFMAN, JEAN-PIERRE · 2005 to 2024
$7.2M
Epidemiology of Familial Late-Onset Alzheimer's DiseaseR01AG041797 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAYEUX, RICHARD P · 2012 to 2016
$4.2M
Response of HCV to Therapy in African AmericansU01DK060345 · NIDDK · SAINT LOUIS UNIVERSITY · PI TAVIS, JOHN E · 2001 to 2005
$1.4M
HCV TREATMENT IN AFRICAN AMERICANS VS NON HISPANIC WHIT*U01DK060352 · NIDDK · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI JEFFERS, LENNOX J · 2001 to 2005
$1.4M
Hepatitis C: host determinants of progression and respo*U01DK060341 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI YANG, HUIYING · 2001 to 2005
$1.4M
NCRR NIH HHS M01 RR000042NCRR NIH HHS M01 RR000046NCRR NIH HHS M01 RR000079NCRR NIH HHS M01 RR00046NCRR NIH HHS M01 RR000645NCRR NIH HHS M01 RR00645NCRR NIH HHS M01 RR016500NCRR NIH HHS M01 RR16500NCRR NIH HHS M02 RR000079NIA NIH HHS R01 AG041797NIA NIH HHS U24 AG021886NIDDK NIH HHS 1 K24 DK072036-01NIDDK NIH HHS 1 R01 DK066920-01NIDDK NIH HHS K24 DK072036NIDDK NIH HHS R01 DK066920NIDDK NIH HHS T32 DK067872NIDDK NIH HHS U01 DK060309NIDDK NIH HHS U01 DK060324NIDDK NIH HHS U01 DK060327NIDDK NIH HHS U01 DK060329NIDDK NIH HHS U01 DK060335NIDDK NIH HHS U01 DK060340NIDDK NIH HHS U01 DK060341NIDDK NIH HHS U01 DK060342NIDDK NIH HHS U01 DK060344NIDDK NIH HHS U01 DK060345NIDDK NIH HHS U01 DK060346NIDDK NIH HHS U01 DK060349NIDDK NIH HHS U01 DK060352NIDDK NIH HHS U01 DK60309NIDDK NIH HHS U01 DK60324NIDDK NIH HHS U01 DK60327NIDDK NIH HHS U01 DK60329NIDDK NIH HHS U01 DK60335NIDDK NIH HHS U01 DK60340NIDDK NIH HHS U01 DK60341NIDDK NIH HHS U01 DK60342NIDDK NIH HHS U01 DK60344NIDDK NIH HHS U01 DK60345NIDDK NIH HHS U01 DK60346NIDDK NIH HHS U01 DK60349NIDDK NIH HHS U01 DK60352
6 · The paper itself

Abstract

BACKGROUND &

aimsWe studied the relationship between IL28B gene-related SNP rs12979860 and early viral kinetics (day 0-28) during peginterferon and ribavirin treatment, in 173 African Americans (AA) and 188 Caucasian Americans (CA) with HCV genotype 1.

methodsWe studied the relationship between IL28B 16 gene-related SNP rs12979860 and early viral kinetics (day 0-28) 17 during peginterferon and ribavirin treatment, in 171 African 18 Americans (AA) and 188 Caucasian Americans (CA) with HCV 19 genotype 1.

resultsCompared to non-C/C genotypes, C/C was associated with greater declines in serum HCV RNA during phase 1 (day 0-2), phase 2 (day 7-28), and day 0-28 and higher response (undetected HCV RNA) rates at weeks 4 and 12 in AA and CA. A static phase and increases in HCV RNA from day 2 to 7 were more common in patients with non-C/C genotypes. C/C was also associated with higher week 24, 48, and 72 response rates in CA (p<0.01) but not in AA. At baseline, SNP genotype was the only independent predictor of phase 1; SNP genotype and phase 1 were independent predictors of phase 2 (p<0.001). There were no racial differences in HCV RNA declines during phase 1, day 2-7, phase 2, and day 0-28 with the same SNP genotype. AA with C/C and C/T genotypes had lower week 24, 48, and 72 (SVR) rates than did CA (p=0.03). SNP C/C predicted higher SVR rates in AA and CA with high baseline HCV RNA (≥ 600,000 IU/ml), and in CA with ≥ 1 log(10)IU/ml decrease in HCV RNA from day 0 to 28.

conclusionsSNP rs12979860 is strongly associated with both phase 1 and phase 2 HCV RNA kinetics in AA and CA with HCV genotype 1.

Indexed as

Polymorphism, Single NucleotideAdultAntiviral AgentsBlack or African AmericanFemaleGenotypeHepacivirusHepatitis C, ChronicHumansInterferon-alphaInterferon LambdaInterferonsInterleukinsMaleMiddle AgedPolyethylene GlycolsAntiviral AgentsInterferon-alphaInterferon Lambdainterferon-lambda, humanInterferonsInterleukinspeginterferon alfa-2aPolyethylene GlycolsRecombinant ProteinsRibavirinRNA, Viral

Identifiers

PMID22027585
PMCPMC3884806
OpenAlexW2047226320

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.