Evidence map›Paper›PMID 22024827›Full record

ArticleAntimicrobial agents and chemotherapy2012

Genetic environment and stability of cfr in methicillin-resistant Staphylococcus aureus CM05.

Jeffrey B Locke, Shahad Rahawi, Jacqueline Lamarre, Alexander S Mankin, Karen Joy Shaw

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Vancomycin Resistance inMicroorganisms · 2022
    Review
  3. Article
  4. Article
  5. Transferable Resistance GeneAntimicrobial agents and chemotherapy · 2020
    Article
  6. Presence and Characterization of a NovelFrontiers in microbiology · 2020
    Article
  7. Review
  8. Expansion of highly stable blaBMC research notes · 2017
    Article
  9. Review
  10. Transcriptional analysis ofAntimicrobial resistance and infection control · 2017
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Tedizolid Phosphate: a Next-Generation Oxazolidinone.Infectious diseases and therapy · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jeffrey B LockeTrius Therapeutics, Inc., San Diego, California, USA.
Shahad Rahawi
Jacqueline Lamarre
Alexander S Mankin
Karen Joy Shaw
Arcturus Therapeutics (United States) · USUniversity of Illinois Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Cfr methyltransferase confers resistance to many 50S ribosomal subunit-targeted antibiotics, including linezolid (LZD), via methylation of the 23S rRNA base A2503 in the peptidyl transferase center. Methicillin-resistant Staphylococcus aureus strain CM05 is the first clinical isolate documented to carry cfr. While cfr is typically plasmid borne, in CM05 it is located on the chromosome and is coexpressed with ermB as part of the mlr operon. Here we evaluated the chromosomal locus, association with mobile genetic elements, and stability of the cfr insertion region in CM05. The cfr-containing mlr operon is located within a 15.5-kb plasmid-like insertion into 23S rRNA allele 4. The region surrounding the cfr gene has a high degree of sequence similarity to the broad-host-range toxin/antitoxin multidrug resistance plasmid pSM19035, including a second ermB gene downstream of the mlr locus and istAS-istBS. Analysis of several individual CM05 colonies revealed two distinct populations for which LZD MICs were either 8 or 2 μg/ml. In the LZD(s) colonies (designated CM05Δ), a recombination event involving the two ermB genes had occurred, resulting in the deletion of cfr and the 3' flanking region (cfr-istAS-istBS-ermB). The fitness advantage of CM05Δ over CM05 (though not likely due to the cfr deletion itself) results in the predominance of CM05Δ in the absence of selective pressure. Minicircles resulting from the ermB recombination event and the novel association of cfr with the pSM19035 plasmid system support the potential for the continued dissemination of cfr.

Indexed as

AcetamidesAnti-Bacterial AgentsBacterial ProteinsBase SequenceChromosomes, BacterialGenetic LociGenomic InstabilityHumansLinezolidMethicillin ResistanceMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsMolecular Sequence DataMutagenesis, InsertionalOperonOxazolidinonesAcetamidesAnti-Bacterial AgentsBacterial ProteinsCFR protein, Staphylococcus aureusLinezolidOxazolidinonesPeptidyl TransferasesRNA, Ribosomal, 23S

Identifiers

PMID22024827
PMCPMC3256036
OpenAlexW2090691399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.