Evidence map›Paper›PMID 22022386›Full record

ArticlePloS one2011

Case-control study of vitamin D, dickkopf homolog 1 (DKK1) gene methylation, VDR gene polymorphism and the risk of colon adenoma in African Americans.

Hassan Ashktorab, Bijou Nguza, Mehrnaz Fatemi, Mehdi Nouraie, Duane T Smoot, Alejandro A Schäffer, Sonia S Kupfer, Carlos A Camargo, Hassan Brim

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 23 citations in OpenAlex.

  1. Pooled it
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  7. Article
  8. Genetic Basis for Colorectal Cancer Disparities.Current colorectal cancer reports · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Hassan AshktorabDepartment of Medicine and Cancer Center, College of Medicine, Howard University, Washington, DC, United States of America. hashktorab@howard.edu
Bijou Nguza
Mehrnaz Fatemi
Mehdi Nouraie
Duane T Smoot
Alejandro A Schäffer
Sonia S Kupfer
Carlos A Camargo
Hassan Brim
Howard University · USHarvard University · USNational Center for Biotechnology Information · USUniversity of Chicago · US

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI ABADIE, VALERIE · 1990 to 2025
$29.8M
Case Studies In GeneticsZIALM000097 · NLM · NATIONAL LIBRARY OF MEDICINE · PI SCHAFFER, ALEJANDRO A · 2009 to 2019
$4.6M
METHYLATION PROFILING AND RISK OF COLORECTAL CANCERR01CA102681 · NCI · HOWARD UNIVERSITY · PI ASHKTORAB, HASSAN · 2003 to 2007
$1.5M
Genetic Association Studies in African American Colorectal Cancer PatientsK08CA142892 · NCI · UNIVERSITY OF CHICAGO · PI KUPFER, SONIA · 2010 to 2014
$822k
Intramural NIH HHSNCI NIH HHS CA102681NCI NIH HHS K08 CA142892NCI NIH HHS R01 CA102681NIDDK NIH HHS P30 DK042086NIDDK NIH HHS P30 DK42086
6 · The paper itself

Abstract

backgroundThere are sparse data on genetic, epigenetic and vitamin D exposure in African Americans (AA) with colon polyp. Consequently, we evaluated serum 25(OH) D levels, vitamin D receptor (VDR) polymorphisms and the methylation status of the tumor suppressor gene dickkopf homolog 1 (DKK1) as risk factors for colon polyp in this population.

methodsThe case-control study consisted of 93 patients with colon polyp (cases) and 187 healthy individuals (controls) at Howard University Hospital. Serum levels of 25(OH)D (including D3, D2, and total) were measured by liquid chromatography-mass spectrometry. DNA analysis focused on 49 single nucleotide polymorphisms (SNPs) in the VDR gene. Promoter methylation analysis of DKK1 was also performed. The resulting data were processed in unadjusted and multivariable logistic regression analyses.

resultsCases and controls differed in vitamin D status (D(3)<50 nmol/L: Median of 35.5 in cases vs. 36.8 in controls nmol/L; P = 0.05). Low levels of 25(OH)D(3) (<50 nmol/L) were observed in 86% of cases and 68% of controls and it was associated with higher risks of colon polyp (odds ratio of 2.7, 95% confidence interval 1.3-3.4). The SNP analysis showed no association between 46 VDR polymorphisms and colon polyp. The promoter of the DKK1 gene was unmethylated in 96% of the samples.

conclusionWe found an inverse association between serum 25(OH)D(3) and colon polyp in AAs. VDR SNPs and DKK1 methylation were not associated with colon polyp. Vitamin D levels may in part explain the higher incidence of polyp in AAs.

Indexed as

AdenomaAgedBlack or African AmericanCase-Control StudiesColonic NeoplasmsColonic PolypsDNA MethylationFemaleGenetic Predisposition to DiseaseHumansIntercellular Signaling Peptides and ProteinsMaleMiddle AgedOdds RatioPolymorphism, Single NucleotidePromoter Regions, GeneticDKK1 protein, humanIntercellular Signaling Peptides and ProteinsReceptors, CalcitriolVitamin D

Identifiers

PMID22022386
PMCPMC3192764
OpenAlexW2089860316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.