Evidence map›Paper›PMID 22022273›Full record

ArticlePLoS genetics2011

Mutator suppression and escape from replication error-induced extinction in yeast.

Alan J Herr, Masanori Ogawa, Nicole A Lawrence, Lindsey N Williams, Julie M Eggington, Mallika Singh, Robert A Smith, Bradley D Preston

Erratum issuedAbstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
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  17. Review
  18. Probing pathways of adaptation with continuous evolution.Current opinion in systems biology · 2019
    Article
  19. Defining the impact of mutation accumulation on replicative lifespan in yeast using cancer-associated mutator phenotypes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors.

Alan J HerrDepartment of Pathology, University of Washington, Seattle, Washington, United States of America.
Masanori Ogawa
Nicole A Lawrence
Lindsey N Williams
Julie M Eggington
Mallika Singh
Robert A Smith
Bradley D Preston

Funding

XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI Joel Daniel Kaufman · 1995 to 2026
$42.5M
SPECIFICITY OF OXYGEN DNA DAMAGE AND MUTAGENESISP01AG001751 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2021
$29.6M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Seattle Cancer and Aging ProgramP20CA103728 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI RABINOVITCH, PETER S · 2003 to 2007
$3.4M
DNA Replication Fidelity and CancerR01CA098243 · NCI · UNIVERSITY OF WASHINGTON · PI PRESTON, BRADLEY D · 2004 to 2007
$976k
Pol Epsilon Proofreading and Genetic Stability in MiceR01CA111582 · NCI · UNIVERSITY OF WASHINGTON · PI PRESTON, BRADLEY D · 2006 to 2009
$974k
MUTATOR ALLELES OF DNA POLYMERASE DELTAR01ES009927 · NIEHS · UNIVERSITY OF WASHINGTON · PI PRESTON, BRADLEY D · 2000 to 2003
$903k
NCI NIH HHS P20 CA103728NCI NIH HHS R01 CA098243NCI NIH HHS R01 CA111582NIA NIH HHS P01 AG001751NIA NIH HHS P01 AG01751NIEHS NIH HHS P30 ES007033NIEHS NIH HHS P30 ES07033NIEHS NIH HHS R01 ES09927NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM07270
6 · The paper itself

Abstract

Cells rely on a network of conserved pathways to govern DNA replication fidelity. Loss of polymerase proofreading or mismatch repair elevates spontaneous mutation and facilitates cellular adaptation. However, double mutants are inviable, suggesting that extreme mutation rates exceed an error threshold. Here we combine alleles that affect DNA polymerase δ (Pol δ) proofreading and mismatch repair to define the maximal error rate in haploid yeast and to characterize genetic suppressors of mutator phenotypes. We show that populations tolerate mutation rates 1,000-fold above wild-type levels but collapse when the rate exceeds 10⁻³ inactivating mutations per gene per cell division. Variants that escape this error-induced extinction (eex) rapidly emerge from mutator clones. One-third of the escape mutants result from second-site changes in Pol δ that suppress the proofreading-deficient phenotype, while two-thirds are extragenic. The structural locations of the Pol δ changes suggest multiple antimutator mechanisms. Our studies reveal the transient nature of eukaryotic mutators and show that mutator phenotypes are readily suppressed by genetic adaptation. This has implications for the role of mutator phenotypes in cancer.

Indexed as

Microsatellite InstabilityAllelesAnimalsDNA DamageDNA Polymerase IIIDNA RepairDNA ReplicationEscherichia coliGenotypeHaploidyMiceMutation RateSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSuppression, GeneticDNA Polymerase IIIPOL3 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID22022273
PMCPMC3188538

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.