Evidence map›Paper›PMID 22020973›Full record

ArticleRNA (New York, N.Y.)2011

The silkworm W chromosome is a source of female-enriched piRNAs.

Shinpei Kawaoka, Koji Kadota, Yuji Arai, Yutaka Suzuki, Tsuguru Fujii, Hiroaki Abe, Yuji Yasukochi, Kazuei Mita, Sumio Sugano, Kentaro Shimizu and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. SilkBase: an integrated transcriptomic and genomic database for Bombyx mori and related species.Database : the journal of biological databases and curation · 2022
    Article
  9. Article
  10. Functional Characterization of Silkworm PIWI Proteins by Embryonic RNAi.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Identification and Characterization of the Masculinizing Function of theInternational journal of molecular sciences · 2021
    Article
  12. Review
  13. Article
  14. Spliceosomal Protein GeneInternational journal of molecular sciences · 2020
    Article
  15. Article
  16. Article
  17. P-element Somatic Inhibitor Protein Binding a Target Sequence inInternational journal of molecular sciences · 2019
    Article
  18. A new approach for comprehensively describing heterogametic sex chromosomes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Shinpei KawaokaDepartment of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Koji Kadota
Yuji Arai
Yutaka Suzuki
Tsuguru Fujii
Hiroaki Abe
Yuji Yasukochi
Kazuei Mita
Sumio Sugano
Kentaro Shimizu
Yukihide Tomari
Toru Shimada
Susumu Katsuma
The University of Tokyo · JPInstitute of Agrobiological Sciences · JPTokyo University of Agriculture and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the silkworm, Bombyx mori, the W chromosome plays a dominant role in female determination. However, neither protein-coding genes nor transcripts have so far been isolated from the W chromosome. Instead, a large amount of functional transposable elements and their remnants are accumulated on the W chromosome. PIWI-interacting RNAs (piRNAs) are 23-30-nt-long small RNAs that potentially act as sequence-specific guides for PIWI proteins to silence transposon activity in animal gonads. In this study, by comparing ovary- and testis-derived piRNAs, we identified numerous female-enriched piRNAs. Our data indicated that female-enriched piRNAs are derived from the W chromosome. Moreover, comparative analyses on piRNA profiles from a series of W chromosome mutant strains revealed a striking enrichment of a specific set of transposon-derived piRNAs in the putative sex-determining region. Collectively, we revealed the nature of the silkworm W chromosome as a source of piRNAs.

Indexed as

AnimalsBombyxChromosomes, InsectDNA Transposable ElementsFemaleGene Expression RegulationGonadsMaleModels, GeneticRNA, Small InterferingSex CharacteristicsSex ChromosomesSex Determination ProcessesDNA Transposable ElementsRNA, Small Interfering

Identifiers

PMID22020973
PMCPMC3222127
OpenAlexW2158685755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.