Evidence map›Paper›PMID 22020226›Full record

ArticleGene2012

mRNA context dependent regulation of cytotoxic necrotizing factor 1 translation by GidA, a tRNA modification enzyme in Escherichia coli.

Hao Yu, Kwang Sik Kim

Abstract read
In one paragraph

Article in Gene, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Adaptor Molecules Epitranscriptome Reprograms Bacterial Pathogenicity.International journal of molecular sciences · 2021
    Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Hao YuDivision of Pediatric Infectious Diseases, Johns Hopkins University School of Medicine, 200 North Wolfe St., Room 3157, Baltimore, MD 21287, USA.
Kwang Sik Kim
Johns Hopkins Medicine · USJohns Hopkins University · US

Funding

PATHOGENESIS OF NEONATAL MENINGITISR01NS026310 · NINDS · JOHNS HOPKINS UNIVERSITY · PI KIM, KWANG S · 1988 to 2008
$3.6M
Leukotrienes and blood-brain barrierR01AI084984 · NIAID · JOHNS HOPKINS UNIVERSITY · PI KIM, KWANG S · 2010 to 2014
$2.0M
E. coli invasion of brain endothelial cellsR56NS026310 · NINDS · JOHNS HOPKINS UNIVERSITY · PI KIM, KWANG S · 2009 to 2009
$410k
NIAID NIH HHS AI84984NIAID NIH HHS R01 AI084984NINDS NIH HHS NS26310NINDS NIH HHS R01 NS026310NINDS NIH HHS R56 NS026310
6 · The paper itself

Abstract

Cytotoxic necrotizing factor 1 (CNF1), the paradigm of Rho GTPase activating bacterial toxins has been shown to promote E. coli invasion of human brain microvascular endothelial cells (HBMEC), which constitute the blood-brain barrier, but its synthesis and secretion is unclear. In this study, we performed mini Tn5 mutagenesis screen to identify genetic requirements for CNF1 production and secretion. Transposon mutagenesis screen of meningitis-causing E. coli K1 strain RS218 revealed that CNF1 production was markedly decreased in a transposon mutant (NBC-28G9) where transposon insertion occurred in the 5' end of gidA gene. In contrast, total deletion of gidA gene has less drastic effect on the production of CNF1. The N-terminus truncated GidA exhibited dominant negative effect on the production of CNF1. The inhibition of CNF1 production by N-terminus truncated GidA was shown to occur at the translational level. This was supported by our demonstrations that cnf1 mRNA transcription levels did not differ between strains RS218 and NBC-28G9; and the production of recombinant CNF1 under the control of artificial promoter was also repressed by truncated GidA. Progressive deletion of DNA regions in cnf1 gene identified two putative regions that were responsible for translational inhibition mediated by truncated GidA.

Indexed as

Gene Expression Regulation, BacterialBacterial ToxinsEscherichia coliEscherichia coli ProteinsGene DeletionMutagenesis, InsertionalOne-Carbon Group TransferasesProtein BiosynthesisRNA, BacterialRNA, MessengerBacterial Toxinscytotoxic necrotizing factor type 1Escherichia coli ProteinsMnmG protein, E coliOne-Carbon Group TransferasesRNA, BacterialRNA, Messenger

Identifiers

PMID22020226
PMCPMC3223105
OpenAlexW2015414787

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.