Evidence map›Paper›PMID 22020079›Full record

ArticleBiochemical and biophysical research communications2011

Clustered hydrophobic amino acids in amphipathic helices mediate erlin1/2 complex assembly.

Deepa Pednekar, Yuan Wang, Tatyana V Fedotova, Richard J H Wojcikiewicz

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Deepa PednekarDepartment of Pharmacology, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA.
Yuan Wang
Tatyana V Fedotova
Richard J H Wojcikiewicz

Funding

IP3 Receptor Ubiquitination and Down-regulationR01DK049194 · NIDDK · UPSTATE MEDICAL UNIVERSITY · PI WOJCIKIEWICZ, RICHARD J H · 2000 to 2012
$3.7M
DOWN-REGULATION OF INSP3 RECEPTORSR29DK049194 · NIDDK · UPSTATE MEDICAL UNIVERSITY · PI WOJCIKIEWICZ, RICHARD J H · 1995 to 1999
–
NIDDK NIH HHS DK049194NIDDK NIH HHS R01 DK049194NIDDK NIH HHS R29 DK049194
6 · The paper itself

Abstract

Erlin1 and erlin2 are highly homologous, ∼40kDa, endoplasmic reticulum membrane proteins that assemble into a ring-shaped complex with a mass of ∼2 MDa. How this complex is formed is not understood, but appears to involve multiple interactions, including a coiled-coil region that mediates lower-order erlin assembly, and a short hydrophobic region, termed the "assembly domain", that mediates higher-order assembly into ∼2 MDa complexes. Here we have used molecular modeling, mutagenesis and cross-linking to examine the role of the assembly domain in higher-order assembly. We find (i) that the assembly domains of erlin1 and erlin2 are amphipathic helices, (ii) that erlin1 alone and erlin2 alone can assemble into ∼2 MDa complexes, (iii) that higher-order assembly is strongly inhibited by point mutations to the assembly domain, (iv) that three interacting hydrophobic residues in the assembly domain and aromaticity are essential for higher-order assembly, and (iv) that while erlins1 and 2 are equally capable of forming lower-order homo- and hetero-oligomers, hetero-oligomers are the most prevalent form when erlin1 and erlin2 are co-expressed. Overall, we conclude that the ∼2 MDa erlin1/2 complex is composed of an assemblage of lower-order hetero-oligomers, probably heterotrimers, linked together by assembly domain hydrophobic residues.

Indexed as

Hydrophobic and Hydrophilic InteractionsAmino AcidsAmino Acid SequenceAnimalsHeLa CellsHumansMembrane ProteinsMiceModels, MolecularMolecular Sequence DataProtein Structure, SecondaryAmino Acidserlin-1 protein, mouseerlin-2 protein, mouseMembrane Proteins

Identifiers

PMID22020079
PMCPMC3242435

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.