Evidence map›Paper›PMID 22015679›Full record

ArticleBiochimica et biophysica acta2011

Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit.

Md Emdadul Haque, Hasan Koc, Huseyin Cimen, Emine C Koc, Linda L Spremulli

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. The phenotypic spectrum ofJIMD reports · 2024
    Article
  2. Translation in Mitochondrial Ribosomes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  8. Review
  9. Protein biosynthesis in mitochondria.Biochemistry. Biokhimiia · 2013
    Review
  10. Article
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Md Emdadul HaqueDepartment of Chemistry, University of North Carolina, Chapel Hill, NC 27599-3290, USA.
Hasan Koc
Huseyin Cimen
Emine C Koc
Linda L Spremulli
Pennsylvania State University · USUniversity of North Carolina at Chapel Hill · US

Funding

MECHANISM OF PROTEIN SYNTHESIS IN MAMMALIAN MITOCHONDRIAR01GM032734 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SPREMULLI, LINDA L · 1985 to 2009
$2.8M
Structural Studies of Mammalian Mitochondrial RibosomesR01GM071034 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI KOC, EMINE C · 2005 to 2009
$1.3M
NIGMS NIH HHS GM071034NIGMS NIH HHS GM32734NIGMS NIH HHS R01 GM032734NIGMS NIH HHS R01 GM071034
6 · The paper itself

Abstract

Mammalian mitochondrial translational initiation factor 3 (IF3(mt)) binds to the small subunit of the ribosome displacing the large subunit during the initiation of protein biosynthesis. About half of the proteins in mitochondrial ribosomes have homologs in bacteria while the remainder are unique to the mitochondrion. To obtain information on the ribosomal proteins located near the IF3(mt) binding site, cross-linking studies were carried out followed by identification of the cross-linked proteins by mass spectrometry. IF3(mt) cross-links to mammalian mitochondrial homologs of the bacterial ribosomal proteins S5, S9, S10, and S18-2 and to unique mitochondrial ribosomal proteins MRPS29, MRPS32, MRPS36 and PTCD3 (Pet309) which has now been identified as a small subunit ribosomal protein. IF3(mt) has extensions on both the N- and C-termini compared to the bacterial factors. Cross-linking of a truncated derivative lacking these extensions gives the same hits as the full length IF3(mt) except that no cross-links were observed to MRPS36. IF3 consists of two domains separated by a flexible linker. Cross-linking of the isolated N- and C-domains was observed to a range of ribosomal proteins particularly with the C-domain carrying the linker which showed significant cross-linking to several ribosomal proteins not found in prokaryotes.

Indexed as

AnimalsCattleEukaryotic Initiation Factor-3HumansMammalsMitochondrial ProteinsModels, BiologicalModels, MolecularPeptide Chain Initiation, TranslationalProtein BindingProtein Interaction MappingProtein Structure, SecondaryRibosomal ProteinsRibosome Subunits, Small, EukaryoticEukaryotic Initiation Factor-3Mitochondrial ProteinsRibosomal Proteins

Identifiers

PMID22015679
PMCPMC3223260
OpenAlexW2003482809

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.