Evidence map›Paper›PMID 22013164›Full record

ArticleNucleic acids research2012

RecA homology search is promoted by mechanical stress along the scanned duplex DNA.

Claudia Danilowicz, Efraim Feinstein, Alyson Conover, Vincent W Coljee, Julea Vlassakis, Yuen-Ling Chan, Douglas K Bishop, Mara Prentiss

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Mechanisms That Govern Recombinase Fidelity Control During Eukaryotic Homologous Recombination.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Mismatch sensing by nucleofilament deciphers mechanism of RecA-mediated homologous recombination.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. DNA Sequence Alignment during Homologous Recombination.The Journal of biological chemistry · 2016
    Review
  16. Article
  17. DNA strand exchange and RecA homologs in meiosis.Cold Spring Harbor perspectives in biology · 2014
    Review
  18. Mechanisms and principles of homology search during recombination.Nature reviews. Molecular cell biology · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Claudia DanilowiczDepartment of Physics, Harvard University, Cambridge, MA 02138, USA.
Efraim Feinstein
Alyson Conover
Vincent W Coljee
Julea Vlassakis
Yuen-Ling Chan
Douglas K Bishop
Mara Prentiss

Funding

ILLEGITIMATE RECOMBINATION BY DRUG RESISTANCE ELEMENTSR01GM025326 · NIGMS · HARVARD UNIVERSITY · PI KLECKNER, NANCY E · 1985 to 2019
$12.5M
MEIOTIC INTERACTIONS TO THE RECA HOMOLOGUE DMC1R01GM050936 · NIGMS · UNIVERSITY OF CHICAGO · PI BISHOP, DOUGLAS K · 1994 to 2019
$9.2M
ILLEGITIMATE RECOMBINATION BY DRUG RESISTANCE ELEMENTSR37GM025326 · NIGMS · HARVARD UNIVERSITY · PI KLECKNER, NANCY E. · 1991 to 2000
$656k
NIGMS NIH HHS GM025326NIGMS NIH HHS GM050936NIGMS NIH HHS R01 GM025326NIGMS NIH HHS R01 GM050936
6 · The paper itself

Abstract

A RecA-single-stranded DNA (RecA-ssDNA) filament searches a genome for sequence homology by rapidly binding and unbinding double-stranded DNA (dsDNA) until homology is found. We demonstrate that pulling on the opposite termini (3' and 5') of one of the two DNA strands in a dsDNA molecule stabilizes the normally unstable binding of that dsDNA to non-homologous RecA-ssDNA filaments, whereas pulling on the two 3', the two 5', or all four termini does not. We propose that the 'outgoing' strand in the dsDNA is extended by strong DNA-protein contacts, whereas the 'complementary' strand is extended by the tension on the base pairs that connect the 'complementary' strand to the 'outgoing' strand. The stress resulting from different levels of tension on its constitutive strands causes rapid dsDNA unbinding unless sufficient homology is present.

Indexed as

Stress, MechanicalDNADNA, Single-StrandedRec A RecombinasesRotationSequence Homology, Nucleic AcidDNADNA, Single-StrandedRec A Recombinases

Identifiers

PMID22013164
PMCPMC3287184

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.