Evidence map›Paper›PMID 22012622›Full record

ArticleGenes & development2011

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge.

Daniel J Grau, Brad A Chapman, Joe D Garlick, Mark Borowsky, Nicole J Francis, Robert E Kingston

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 1 synthesis or guideline pooled it, 261 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Polycomb-mediated 3D chromatin interactions in gene regulation.Current opinion in genetics & development · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Research square · 2025
    Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Review
  20. Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daniel J GrauDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Brad A Chapman
Joe D Garlick
Mark Borowsky
Nicole J Francis
Robert E Kingston
Harvard University · USMassachusetts General Hospital · US

Funding

Maintenance of Gene ExpressionR01GM043901 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KINGSTON, ROBERT · 1991 to 2018
$10.7M
Transcription Factor Interactions with NucleosomesR37GM048405 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KINGSTON, ROBERT · 2009 to 2018
$3.9M
Biochemical dissection of epigenetic inheritance by Polycomb group proteins.R01GM078456 · NIGMS · HARVARD UNIVERSITY · PI FRANCIS, NICOLE JANE · 2006 to 2010
$2.0M
NIGMS NIH HHS GM043901NIGMS NIH HHS GM078456-01NIGMS NIH HHS R01 GM043901NIGMS NIH HHS R01 GM078456NIGMS NIH HHS R37 GM048405
6 · The paper itself

Abstract

Polycomb group (PcG) proteins are required for the epigenetic maintenance of developmental genes in a silent state. Proteins in the Polycomb-repressive complex 1 (PRC1) class of the PcG are conserved from flies to humans and inhibit transcription. One hypothesis for PRC1 mechanism is that it compacts chromatin, based in part on electron microscopy experiments demonstrating that Drosophila PRC1 compacts nucleosomal arrays. We show that this function is conserved between Drosophila and mouse PRC1 complexes and requires a region with an overrepresentation of basic amino acids. While the active region is found in the Posterior Sex Combs (PSC) subunit in Drosophila, it is unexpectedly found in a different PRC1 subunit, a Polycomb homolog called M33, in mice. We provide experimental support for the general importance of a charged region by predicting the compacting capability of PcG proteins from species other than Drosophila and mice and by testing several of these proteins using solution assays and microscopy. We infer that the ability of PcG proteins to compact chromatin in vitro can be predicted by the presence of domains of high positive charge and that PRC1 components from a variety of species conserve this highly charged region. This supports the hypothesis that compaction is a key aspect of PcG function.

Indexed as

AnimalsCell LineChromatinConserved SequenceDrosophila melanogasterEvolution, MolecularMiceMutationPhylogenyPolycomb-Group ProteinsPolycomb Repressive Complex 1Repressor ProteinsStructure-Activity RelationshipCbx2 protein, mouseChromatinPolycomb-Group ProteinsPolycomb Repressive Complex 1Repressor Proteins

Identifiers

PMID22012622
PMCPMC3205590
OpenAlexW2098500735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.