Evidence map›Paper›PMID 22012128›Full record

ReviewKidney international2012

A systems view of genetics in chronic kidney disease.

Benjamin J Keller, Sebastian Martini, John R Sedor, Matthias Kretzler

Abstract readReview
In one paragraph

Review in Kidney international, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Observational
  3. Article
  4. Article
  5. Article
  6. Article
  7. Epigenetic Associations With Estimated Glomerular Filtration Rate Among Men With Human Immunodeficiency Virus Infection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Article
  8. How Omics Data Can Be Used in Nephrology.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2018
    Review
  9. Chromatin Conformation Links Distal Target Genes to CKD Loci.Journal of the American Society of Nephrology : JASN · 2018
    Article
  10. Article
  11. Renal biopsy-driven molecular target identification in glomerular disease.Pflugers Archiv : European journal of physiology · 2017
    Review
  12. Article
  13. Article
  14. Integrative Biology of Diabetic Kidney Disease.Kidney diseases (Basel, Switzerland) · 2015
    Article
  15. Review
  16. Review
  17. Defining nephrotic syndrome from an integrative genomics perspective.Pediatric nephrology (Berlin, Germany) · 2015
    Review
  18. Integrative biology identifies shared transcriptional networks in CKD.Journal of the American Society of Nephrology : JASN · 2014
    Article
  19. Serum metabolomic profiling and incident CKD among African Americans.Clinical journal of the American Society of Nephrology : CJASN · 2014
    Article
  20. suPAR and Team Nephrology.BMC medicine · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Benjamin J KellerDepartment of Computer Science, Eastern Michigan University, Ypsilanti, Michigan, USA.
Sebastian Martini
John R Sedor
Matthias Kretzler
University of Michigan–Ann Arbor · USCase Western Reserve University · USEastern Michigan University · US

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Nation Center- Integrative Biomedical Informatics(RMI)U54DA021519 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID · 2005 to 2010
$21.3M
Training Program in Clinical & Translationa Research in Human Glomerular DiseaseU54DK083912 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KRETZLER, MATTHIAS · 2009 to 2023
$20.3M
University of Michigan O'Brien Kidney Translational Core CenterP30DK081943 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROSIUS, FRANK C · 2008 to 2022
$12.9M
NIDA NIH HHS U54 DA021519NIDA NIH HHS U54 DA021519 01A1NIDDK NIH HHS P30 DK020572NIDDK NIH HHS P30 DK081943NIDDK NIH HHS P30 DK081943-01NIDDK NIH HHS U54DK083912
6 · The paper itself

Abstract

A tight interplay of genetic predisposition and environmental factors define the onset and the rate of progression of chronic renal disease. We are seeing a rapid expansion of information about genetic loci associated with kidney function and complex renal disease. However, discovering the functional links that bridge the gap from genetic risk loci to disease phenotype is one of the main challenges ahead. Risk loci are currently assigned to a putative context using the functional annotation of the closest genes via a guilt-by-proximity approach. These approaches can be extended by strategies integrating genetic risk loci with kidney-specific, genome-wide gene expression. Risk loci-associated transcripts can be assigned a putative disease-specific function using gene expression coregulation networks. Ultimately, genotype-phenotype dependencies postulated from these associative approaches in humans need to be tested via genetic modification in model organisms. In this review, we survey strategies that employ human tissue-specific expression and the use of model organisms to identify and validate the functional relationship between genotype and phenotype in renal disease. Strategies to unravel how genetic risk and environmental factors orchestrate renal disease manifestation can be the first steps toward a more integrated, holistic approach urgently needed for chronic renal diseases.

Indexed as

AnimalsDisease Models, AnimalGenetic Association StudiesGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyHumansMiceModels, GeneticQuantitative Trait LociRenal Insufficiency, ChronicSystems Biology

Identifiers

PMID22012128
PMCPMC4224965
OpenAlexW2084270956

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.