Evidence map›Paper›PMID 22011192›Full record

ArticleJournal of the American Chemical Society2011

Electrochemical and structural properties of a protein system designed to generate tyrosine Pourbaix diagrams.

Melissa C Martínez-Rivera, Bruce W Berry, Kathleen G Valentine, Kristina Westerlund, Sam Hay, Cecilia Tommos

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Hydrogen production by a fullyDalton transactions (Cambridge, England : 2003) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Proton-Coupled Electron Transfer from Tyrosine in the Interior of aJournal of the American Chemical Society · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Proton-coupled electron hopping in Ru-modified P. aeruginosa azurin.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  17. Review
  18. Article
  19. Article
  20. Electron flow through nitrotyrosinate in Pseudomonas aeruginosa azurin.Journal of the American Chemical Society · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Melissa C Martínez-RiveraGraduate Group in Biochemistry & Molecular Biophysics and Department of Biochemistry & Biophysics, 905 Stellar-Chance Laboratories, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059, United States.
Bruce W Berry
Kathleen G Valentine
Kristina Westerlund
Sam Hay
Cecilia Tommos
University of Pennsylvania · USStockholm University · SE

Funding

Understanding Protein RadicalsR01GM079190 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI TOMMOS, CECILIA · 2008 to 2024
$3.6M
Exploring tyrosine redox chemistry in model proteinsF31GM096756 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MARTINEZ-RIVERA, MELISSA · 2011 to 2013
$102k
Biotechnology and Biological Sciences Research Council BB/H021523/1NIGMS NIH HHS F31 GM096756NIGMS NIH HHS GM079190NIGMS NIH HHS GM096756NIGMS NIH HHS R01 GM079190
6 · The paper itself

Abstract

This report describes a model protein specifically tailored to electrochemically study the reduction potential of protein tyrosine radicals as a function of pH. The model system is based on the 67-residue α(3)Y three-helix bundle. α(3)Y contains a single buried tyrosine at position 32 and displays structural properties inherent to a protein. The present report presents differential pulse voltammograms obtained from α(3)Y at both acidic (pH 5.6) and alkaline (pH 8.3) conditions. The observed Faradaic response is uniquely associated with Y32, as shown by site-directed mutagenesis. This is the first time voltammetry is successfully applied to detect a redox-active tyrosine residing in a structured protein environment. Tyrosine is a proton-coupled electron-transfer cofactor making voltammetry-based pH titrations a central experimental approach. A second set of experiments was performed to demonstrate that pH-dependent studies can be conducted on the redox-active tyrosine without introducing large-scale structural changes in the protein scaffold. α(3)Y was re-engineered with the specific aim to place the imidazole group of a histidine close to the Y32 phenol ring. α(3)Y-K29H and α(3)Y-K36H each contain a histidine residue whose protonation perturbs the fluorescence of Y32. We show that these variants are stable and well-folded proteins whose helical content, tertiary structure, solution aggregation state, and solvent-sequestered position of Y32 remain pH insensitive across a range of at least 3-4 pH units. These results confirm that the local environment of Y32 can be altered and the resulting radical site studied by voltammetry over a broad pH range without interference from long-range structural effects.

Indexed as

ElectrochemistryFree RadicalsHydrogen-Ion ConcentrationMolecular StructureProteinsTyrosineFree RadicalsProteinsTyrosine

Identifiers

PMID22011192
PMCPMC4076202
OpenAlexW2075796980

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.