Evidence map›Paper›PMID 22006949›Full record

ArticleThe Journal of cell biology2011

Energy determinants GAPDH and NDPK act as genetic modifiers for hepatocyte inclusion formation.

Natasha T Snider, Sujith V W Weerasinghe, Amika Singla, Jessica M Leonard, Shinichiro Hanada, Philip C Andrews, Anna S Lok, M Bishr Omary

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  7. Concurrent isolation of hepatic stem cells and hepatocytes from the human liver.In vitro cellular & developmental biology. Animal · 2020
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  17. Carbamoyl phosphate synthetase-1 is a rapid turnover biomarker in mouse and human acute liver injury.American journal of physiology. Gastrointestinal and liver physiology · 2014
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Natasha T SniderDepartment of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA. nsnider@umich.edu
Sujith V W Weerasinghe
Amika Singla
Jessica M Leonard
Shinichiro Hanada
Philip C Andrews
Anna S Lok
M Bishr Omary
University of Michigan–Ann Arbor · USGeneral Department of Preventive Medicine · VNLaboratoire d’immunologie intégrative du cancer · FRKurume University · JP

Funding

MICHIGAN INSTITUTE FOR CLINICAL AND HEALTH RESEARCH (MICHR) (UL1): (BPCA)UL1RR024986 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHANLEY, THOMAS P. · 2007 to 2011
$51.2M
University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OWYANG, CHUNG · 1986 to 2021
$22.5M
Regulation and Dynamics of Keratins in Digestive OrgansR01DK052951 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OMARY, BISHR · 1997 to 2015
$4.5M
Genetic and molecular effects on hepatocyte nucleocytoplasm protein aggregationR56DK052951 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OMARY, BISHR · 2012 to 2012
$179k
NCRR NIH HHS UL1 RR024986NCRR NIH HHS UL1RR024986NIDDK NIH HHS DK34933NIDDK NIH HHS DK52951NIDDK NIH HHS P30 DK034933NIDDK NIH HHS R01 DK052951NIDDK NIH HHS R56 DK052951
6 · The paper itself

Abstract

Genetic factors impact liver injury susceptibility and disease progression. Prominent histological features of some chronic human liver diseases are hepatocyte ballooning and Mallory-Denk bodies. In mice, these features are induced by 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC) in a strain-dependent manner, with the C57BL and C3H strains showing high and low susceptibility, respectively. To identify modifiers of DDC-induced liver injury, we compared C57BL and C3H mice using proteomic, biochemical, and cell biological tools. DDC elevated reactive oxygen species (ROS) and oxidative stress enzymes preferentially in C57BL livers and isolated hepatocytes. C57BL livers and hepatocytes also manifested significant down-regulation, aggregation, and nuclear translocation of glyceraldehyde 3-phosphate dehydrogenase (GAPDH). GAPDH knockdown depleted bioenergetic and antioxidant enzymes and elevated hepatocyte ROS, whereas GAPDH overexpression decreased hepatocyte ROS. On the other hand, C3H livers had higher expression and activity of the energy-generating nucleoside-diphosphate kinase (NDPK), and knockdown of hepatocyte NDPK augmented DDC-induced ROS formation. Consistent with these findings, cirrhotic, but not normal, human livers contained GAPDH aggregates and NDPK complexes. We propose that GAPDH and NDPK are genetic modifiers of murine DDC-induced liver injury and potentially human liver disease.

Indexed as

AnimalsGene Expression Regulation, EnzymologicGlyceraldehyde-3-Phosphate DehydrogenasesHepatocytesHumansInclusion BodiesLiver DiseasesMiceMice, Inbred StrainsNucleoside-Diphosphate KinaseOxidative StressPyridinesReactive Oxygen Species3,5-diethoxycarbonyl-1,4-dihydrocollidineGlyceraldehyde-3-Phosphate DehydrogenasesNucleoside-Diphosphate KinasePyridinesReactive Oxygen Species

Identifiers

PMID22006949
PMCPMC3198167
OpenAlexW2025678527

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.