Evidence map›Paper›PMID 22006920›Full record

ArticleThe Journal of biological chemistry2011

Engineering bifunctional laccase-xylanase chimeras for improved catalytic performance.

Lucas F Ribeiro, Gilvan P Furtado, Marcos R Lourenzoni, Antonio J Costa-Filho, Camila R Santos, Simone C Peixoto Nogueira, Jorge A Betini, Maria de Lourdes T M Polizeli, Mario T Murakami, Richard J Ward

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Structure-Function Relationship of the β-Hairpin ofInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Review
  5. Structural Characterization of Multienzyme Assemblies: An Overview.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Microbial lipolytic fusion enzymes: current state and future perspectives.World journal of microbiology & biotechnology · 2017
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lucas F RibeiroDepartamento de Bioquímica e Imunologia, Universidade de São Paulo, Ribeirão Preto-SP, 14049-900, Brazil.
Gilvan P Furtado
Marcos R Lourenzoni
Antonio J Costa-Filho
Camila R Santos
Simone C Peixoto Nogueira
Jorge A Betini
Maria de Lourdes T M Polizeli
Mario T Murakami
Richard J Ward

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two bifunctional enzymes exhibiting combined xylanase and laccase activities were designed, constructed, and characterized by biochemical and biophysical methods. The Bacillus subtilis cotA and xynA genes were used as templates for gene fusion, and the xynA coding sequence was inserted into a surface loop of the cotA. A second chimera was built replacing the wild-type xynA gene by a thermostable variant (xynAG3) previously obtained by in vitro molecular evolution. Kinetic measurements demonstrated that the pH and temperature optima of the catalytic domains in the chimeras were altered by less than 0.5 pH units and 5 °C, respectively, when compared with the parental enzymes. In contrast, the catalytic efficiency (k(cat)/K(m)) of the laccase activity in both chimeras was 2-fold higher than for the parental laccase. Molecular dynamics simulations of the CotA-XynA chimera indicated that the two domains are in close contact, which was confirmed by the low resolution structure obtained by small angle x-ray scattering. The simulation also indicates that the formation of the inter-domain interface causes the dislocation of the loop comprising residues Leu-558 to Lys-573 in the laccase domain, resulting in a more accessible active site and exposing the type I Cu(2+) ion to the solvent. These structural changes are consistent with the results from UV-visible electronic and EPR spectroscopy experiments of the type I copper between the native and chimeric enzymes and are likely to contribute to the observed increase in catalytic turnover number.

Indexed as

Electron Spin Resonance SpectroscopyHydrogen-Ion ConcentrationKineticsLaccaseMolecular Dynamics SimulationProtein EngineeringRecombinant Fusion ProteinsXylosidasesLaccaseRecombinant Fusion ProteinsXylosidases

Identifiers

PMID22006920
PMCPMC3234842

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.