Evidence map›Paper›PMID 22006311›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Mutations in 12 genes for inherited ovarian, fallopian tube, and peritoneal carcinoma identified by massively parallel sequencing.

Tom Walsh, Silvia Casadei, Ming K Lee, Christopher C Pennil, Alex S Nord, Anne M Thornton, Wendy Roeb, Kathy J Agnew, Sunday M Stray, Anneka Wickramanayake and 5 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04142333 (GIA in Cascade Testing), which is not on this map. Cited by 466 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
466citing papers in PubMed, 8 pooled it
29.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04142333 naunknown statusnot on this mapstarted 2020, after this paper: background citation

GIA in Cascade Testing

TypeinterventionalSponsorUniversity of VirginiaRan2020 to 2022Enrolled20ConditionsGenetic PredispositionArmsGIA
3 · Its place in the literature

Who cites it

466 citing papers in PubMed, 8 syntheses or guidelines pooled it, 929 citations in OpenAlex.

  1. Guideline
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  5. Summary ofGenes · 2020
    Pooled it
  6. Guideline
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  8. Germline and Somatic Tumor Testing in Epithelial Ovarian Cancer: ASCO Guideline.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2020
    Pooled it
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  18. Combination of PARP Inhibitor Olaparib, and PD-L1 Inhibitor Durvalumab, in Recurrent Ovarian Cancer: a Proof-of-Concept Phase II Study.Clinical cancer research : an official journal of the American Association for Cancer Research · 2020
    Trial
  19. Article
  20. Article

406 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Tom WalshDivision of Medical Genetics, Department of Medicine, University of Washington School of Medicine, Seattle, WA 98195, USA.
Silvia Casadei
Ming K Lee
Christopher C Pennil
Alex S Nord
Anne M Thornton
Wendy Roeb
Kathy J Agnew
Sunday M Stray
Anneka Wickramanayake
Barbara Norquist
Kathryn P Pennington
Rochelle L Garcia
Mary-Claire King
Elizabeth M Swisher
Medical Genetics Center · DEGynecologic Oncology Group · USUniversity of Washington · US

Funding

Vaccinating against IGFBP-2 to prevent ovarian cancer relapseP50CA083636 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DRESCHER, CHARLES, URBAN, NICOLE DENISE · 1999 to 2015
$35.1M
COMPLETE VARIANT PROFILING OF ALL KNOWN BREAST CANCER GENESR01CA175716 · NCI · UNIVERSITY OF WASHINGTON · PI KING, MARY-CLAIRE, WALSH, TOMAS D · 2013 to 2017
$3.1M
Discovery of New Genes for Inherited Predisposition to Breast Cancer by Exome SeqR01CA157744 · NCI · UNIVERSITY OF WASHINGTON · PI KING, MARY-CLAIRE, WALSH, TOMAS D · 2011 to 2015
$2.7M
Defining a Pre-Malignant Phenotype in Fallopian Tube EpitheliumR01CA131965 · NCI · UNIVERSITY OF WASHINGTON · PI SWISHER, ELIZABETH MARY · 2009 to 2013
$1.6M
NCI NIH HHS P50 CA083636NCI NIH HHS P50CA083636NCI NIH HHS R01 CA131965NCI NIH HHS R01CA131965NCI NIH HHS R01 CA157744NCI NIH HHS R01CA157744NCI NIH HHS R01 CA175716
6 · The paper itself

Abstract

Inherited loss-of-function mutations in BRCA1 and BRCA2 and other tumor suppressor genes predispose to ovarian carcinomas, but the overall burden of disease due to inherited mutations is not known. Using targeted capture and massively parallel genomic sequencing, we screened for germ-line mutations in 21 tumor suppressor genes in genomic DNA from women with primary ovarian, peritoneal, or fallopian tube carcinoma. Subjects were consecutively enrolled at diagnosis and not selected for age or family history. All classes of mutations, including point mutations and large genomic deletions and insertions, were detected. Of 360 subjects, 24% carried germ-line loss-of-function mutations: 18% in BRCA1 or BRCA2 and 6% in BARD1, BRIP1, CHEK2, MRE11A, MSH6, NBN, PALB2, RAD50, RAD51C, or TP53. Six of these genes were not previously implicated in inherited ovarian carcinoma. Primary carcinomas were generally characterized by genomic loss of normal alleles of the mutant genes. Of women with inherited mutations, >30% had no family history of breast or ovarian carcinoma, and >35% were 60 y or older at diagnosis. More patients with ovarian carcinoma carry cancer-predisposing mutations and in more genes than previously appreciated. Comprehensive genetic testing for inherited carcinoma is warranted for all women with ovarian, peritoneal, or fallopian tube carcinoma, regardless of age or family history. Clinical genetic testing is currently done gene by gene, with each test costing thousands of dollars. In contrast, massively parallel sequencing allows such testing for many genes simultaneously at low cost.

Indexed as

Germ-Line MutationAdultAgedAllelesFallopian Tube NeoplasmsFemaleGenes, Wilms TumorHumansMiddle AgedMosaicismOvarian NeoplasmsPeritoneal Neoplasms

Identifiers

PMID22006311
PMCPMC3207658
OpenAlexW2169983032

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.