Evidence map›Paper›PMID 22004757›Full record

ArticleBiophysical journal2011

The two-pathway model of the biological catch-bond as a limit of the allosteric model.

Yuriy V Pereverzev, Eugenia Prezhdo, Evgeni V Sokurenko

Abstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Trial
  2. Theory and Examples of Catch Bonds.The journal of physical chemistry. B · 2024
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Molecular Paradigms for Biological Mechanosensing.The journal of physical chemistry. B · 2021
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yuriy V PereverzevDepartment of Chemistry, University of Rochester, Rochester, New York, USA.
Eugenia Prezhdo
Evgeni V Sokurenko

Funding

Dynamic Properties of Bacterial AdhesionsR01AI050940 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2002 to 2011
$4.7M
NIAID NIH HHS R01 AI050940NIAID NIH HHS R01 AI50940
6 · The paper itself

Abstract

Catch-binding is a counterintuitive phenomenon in which the lifetime of a receptor/ligand bond increases when a force is applied to break the bond. Several mechanisms have been proposed to rationalize catch-binding. In the two-pathway model, the force drives the system away from its native dissociation pathway into an alternative pathway involving a higher energy barrier. Here, we analyze an allosteric model suggesting that a force applied to the complex alters the distribution of receptor conformations, and as a result, induces changes in the ligand-binding site. The model assumes explicitly that the allosteric transitions govern the properties of the ligand site. We demonstrate that the dynamics of the ligand is described by two relaxation times, one of which arises from the allosteric site. Therefore, we argue that one can characterize the allosteric transitions by studying the receptor/ligand binding. We show that the allosteric description reduces to the two-pathway model in the limit when the allosteric transitions are faster than the bond dissociation. The formal results are illustrated with two systems, P-selectin/PSGL-1 and FimH/mannose, subjected to both constant and time-dependent forces. The report advances our understanding of catch-binding by combining alternative physical models into a unified description and makes the problem more tractable for the bond mechanics community.

Indexed as

Models, BiologicalAllosteric RegulationBiomechanical PhenomenaFimbriae ProteinsKineticsLigandsMannoseMembrane GlycoproteinsProtein BindingP-SelectinFimbriae ProteinsLigandsMannoseMembrane GlycoproteinsP-SelectinP-selectin ligand protein

Identifiers

PMID22004757
PMCPMC3192973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.