Evidence map›Paper›PMID 22004349›Full record

ArticleAnalytical chemistry2011

Liquid chromatography-high resolution mass spectrometry analysis of fatty acid metabolism.

Jurre J Kamphorst, Jing Fan, Wenyun Lu, Eileen White, Joshua D Rabinowitz

Abstract read
In one paragraph

Article in Analytical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Metabolic Profile ofMetabolites · 2024
    Article
  3. Article
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  5. Article
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  7. Article
  8. Review
  9. Article
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  12. Rumen fluid metabolomics of beef steers differing in feed efficiency.Metabolomics : Official journal of the Metabolomic Society · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jurre J KamphorstLewis-Sigler Institute for Integrative Genomics and Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.
Jing Fan
Wenyun Lu
Eileen White
Joshua D Rabinowitz

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Role of Autophagy in CancerR01CA130893 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI WHITE, EILEEN P. · 2008 to 2017
$3.4M
Role of Tumor and Stromal Cell Metabolism in Stress Adaptation and ProgressionRC1CA147961 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI COLLER, HILARY A, RABINOWITZ, JOSHUA D · 2009 to 2010
$1.0M
Howard Hughes Medical InstituteNCI NIH HHS 1RC1CA147961-02NCI NIH HHS R01 CA130893NCI NIH HHS RC1 CA147961NIGMS NIH HHS P50 GM071508NIGMS NIH HHS P50GM071508
6 · The paper itself

Abstract

We present a liquid chromatography/mass spectrometry (LC/MS) method for long-chain and very-long-chain fatty acid analysis and its application to (13)C-tracer studies of fatty acid metabolism. Fatty acids containing 14 to 36 carbon atoms are separated by C(8) reversed-phase chromatography using a water-methanol gradient with tributylamine as ion pairing agent, ionized by electrospray and analyzed by a stand-alone orbitrap mass spectrometer. The median limit of detection is 5 ng/mL with a linear dynamic range of 100-fold. Ratios of unlabeled to (13)C-labeled species are quantitated precisely and accurately (average relative standard deviation 3.2% and deviation from expectation 2.3%). In samples consisting of fatty acids saponified from cultured mammalian cells, 45 species are quantified, with average intraday relative standard deviations for independent biological replicates of 11%. The method enables quantitation of molecular ion peaks for all labeled forms of each fatty acid. Different degrees of (13)C-labeling from glucose and glutamine correspond to fatty acid uptake from media, de novo synthesis, and elongation. To exemplify the utility of the method, we examined isogenic cell lines with and without activated Ras oncogene expression. Ras increases the abundance and alters the labeling patterns of saturated and monounsaturated very-long-chain fatty acids, with the observed pattern consistent with Ras leading to enhanced activity of ELOVL4 or an enzyme with similar catalytic activity. This LC/MS method and associated isotope tracer techniques should be broadly applicable to investigating fatty acid metabolism.

Indexed as

Chromatography, High Pressure LiquidSpectrometry, Mass, Electrospray IonizationAnimalsCarbon IsotopesCell LineChromatography, Reverse-PhaseFatty AcidsGlucoseGlutamineMiceCarbon IsotopesFatty AcidsGlucoseGlutamine

Identifiers

PMID22004349
PMCPMC3230881

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.