Evidence map›Paper›PMID 22003127›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Mitochondrial ribosomal protein L12 selectively associates with human mitochondrial RNA polymerase to activate transcription.

Yulia V Surovtseva, Timothy E Shutt, Justin Cotney, Huseyin Cimen, Sophia Y Chen, Emine C Koc, Gerald S Shadel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Article
  7. A roadmap for ribosome assembly in human mitochondria.Nature structural & molecular biology · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
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  14. Review
  15. Mitochondrial ribosomal stress in lung diseases.American journal of physiology. Lung cellular and molecular physiology · 2022
    Review
  16. Article
  17. Article
  18. Review
  19. Human Mitochondrial RNA Processing and Modifications: Overview.International journal of molecular sciences · 2021
    Review
  20. ING2 Controls Mitochondrial RespirationFrontiers in cell and developmental biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yulia V SurovtsevaDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520, USA.
Timothy E Shutt
Justin Cotney
Huseyin Cimen
Sophia Y Chen
Emine C Koc
Gerald S Shadel
Yale University · USPennsylvania State University · US

Funding

Nuclear Control of Mitochondrial Gene ExpressionR01HL059655 · NHLBI · YALE UNIVERSITY · PI SHADEL, GERALD · 1997 to 2011
$3.1M
Analysis of Mammalian Mitochondrial Transcription MachineryF32GM093590 · NIGMS · YALE UNIVERSITY · PI SUROVTSEVA, YULIA · 2010 to 2011
$93k
NHLBI NIH HHS R01 HL-059655NHLBI NIH HHS R01 HL059655NIGMS NIH HHS F32 GM093590NIGMS NIH HHS F32 GM093590-01
6 · The paper itself

Abstract

Basal transcription of human mitochondrial DNA (mtDNA) in vitro requires the single-subunit, bacteriophage-related RNA polymerase, POLRMT, and transcription factor h-mtTFB2. This two-component system is activated differentially at mtDNA promoters by human mitochondrial transcription factor A (h-mtTFA). Mitochondrial ribosomal protein L7/L12 (MRPL12) binds directly to POLRMT, but whether it does so in the context of the ribosome or as a "free" protein in the matrix is unknown. Furthermore, existing evidence that MRPL12 activates mitochondrial transcription derives from overexpression studies in cultured cells and transcription experiments using crude mitochondrial lysates, precluding direct effects of MRPL12 on transcription to be assigned. Here, we report that depletion of MRPL12 from HeLa cells by shRNA results in decreased steady-state levels of mitochondrial transcripts, which are not accounted for by changes in RNA stability. We also show that a significant "free" pool of MRPL12 exists in human mitochondria not associated with ribosomes. "Free" MRPL12 binds selectively to POLRMT in vivo in a complex distinct from those containing h-mtTFB2. Finally, using a fully recombinant mitochondrial transcription system, we demonstrate that MRPL12 stimulates promoter-dependent and promoter-independent transcription directly in vitro. Based on these results, we propose that, when not associated with ribosomes, MRPL12 has a second function in transcription, perhaps acting to facilitate the transition from initiation to elongation. We speculate that this is one mechanism to coordinate mitochondrial ribosome biogenesis and transcription in human mitochondria, where transcription of rRNAs from the mtDNA presumably needs to be adjusted in accordance with the rate of import and assembly of the nucleus-encoded MRPs into ribosomes.

Indexed as

Transcription, GeneticDNA-Directed RNA PolymerasesHeLa CellsHumansMitochondriaReal-Time Polymerase Chain ReactionRibosomal ProteinsDNA-Directed RNA Polymerasesribosomal protein L7-L12Ribosomal Proteins

Identifiers

PMID22003127
PMCPMC3207702
OpenAlexW1975753698

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.