Evidence map›Paper›PMID 22002058›Full record

ArticleThe Journal of biological chemistry2011

The unfolded protein response (UPR)-activated transcription factor X-box-binding protein 1 (XBP1) induces microRNA-346 expression that targets the human antigen peptide transporter 1 (TAP1) mRNA and governs immune regulatory genes.

Rafal Bartoszewski, Joseph W Brewer, Andras Rab, David K Crossman, Sylwia Bartoszewska, Niren Kapoor, Cathy Fuller, James F Collawn, Zsuzsa Bebok

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it, 147 citations in OpenAlex.

  1. Pooled it
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  14. Dual RNase activity of IRE1 as a target for anticancer therapies.Journal of cell communication and signaling · 2023
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Rafal BartoszewskiDepartment of Cell Biology, University of Alabama, Birmingham, Alabama 35294-0005. Electronic address: rafalbar@uab.edu.
Joseph W BrewerDepartment of Microbiology and Immunology, University of South Alabama, Mobile, Alabama 36688-0002.
Andras RabDepartment of Cell Biology, University of Alabama, Birmingham, Alabama 35294-0005.
David K CrossmanDepartment of Genetics, University of Alabama, Birmingham, Alabama 35294-0005.
Sylwia BartoszewskaDepartment of Cell Biology, University of Alabama, Birmingham, Alabama 35294-0005.
Niren KapoorDepartment of Physiology, University of Alabama, Birmingham, Alabama 35294-0005.
Cathy FullerDepartment of Physiology, University of Alabama, Birmingham, Alabama 35294-0005.
James F CollawnDepartment of Cell Biology, University of Alabama, Birmingham, Alabama 35294-0005.
Zsuzsa BebokDepartment of Cell Biology, University of Alabama, Birmingham, Alabama 35294-0005. Electronic address: bebok@uab.edu.
University of Alabama at Birmingham · USUniversity of South Alabama · US

Funding

SODIUM ENTRY INTO AMILORIDE-SENSITIVE EPITHELIAR01DK037206 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FULLER, CATHERINE M · 1986 to 2014
$3.9M
HOMEOSTASIS OF THE ER IN DIFFERENTIATING B CELLSR01GM061970 · NIGMS · UNIVERSITY OF SOUTH ALABAMA · PI BARRINGTON, ROBERT A · 2000 to 2013
$3.5M
Cell Biology of CFTR in Polarized EpitheliaR01DK060065 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI COLLAWN, JAMES F. · 2003 to 2013
$3.1M
CFTR Biogenesis and Function in EpitheliaR01HL076587 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BEBOK, ZSUZSA · 2004 to 2012
$2.6M
NHLBI NIH HHS HL076587NHLBI NIH HHS R01 HL076587NIDDK NIH HHS DK060065NIDDK NIH HHS R01 DK037206NIDDK NIH HHS R01 DK060065NIGMS NIH HHS GM61970NIGMS NIH HHS R01 GM061970
6 · The paper itself

Abstract

To identify endoplasmic reticulum (ER) stress-induced microRNAs (miRNA) that govern ER protein influx during the adaptive phase of unfolded protein response, we performed miRNA microarray profiling and analysis in human airway epithelial cells following ER stress induction using proteasome inhibition or tunicamycin treatment. We identified miR-346 as the most significantly induced miRNA by both classic stressors. miR-346 is encoded within an intron of the glutamate receptor ionotropic delta-1 gene (GRID1), but its ER stress-associated expression is independent of GRID1. We demonstrated that the spliced X-box-binding protein-1 (sXBP1) is necessary and sufficient for ER stress-associated miR-346 induction, revealing a novel role for this unfolded protein response-activated transcription factor. In mRNA profiling arrays, we identified 21 mRNAs that were reduced by both ER stress and miR-346. The target genes of miR-346 regulate immune responses and include the major histocompatibility complex (MHC) class I gene products, interferon-induced genes, and the ER antigen peptide transporter 1 (TAP1). Although most of the repressed mRNAs appear to be indirect targets because they lack specific seeding sites for miR-346, we demonstrate that the human TAP1 mRNA is a direct target of miR-346. The human TAP1 mRNA 3'-UTR contains a 6-mer canonical seeding site for miR-346. Importantly, the ER stress-associated reduction in human TAP1 mRNA and protein levels could be reversed with an miR-346 antagomir. Because TAP function is necessary for proper MHC class I-associated antigen presentation, our results provide a novel mechanistic explanation for reduced MHC class I-associated antigen presentation that was observed during ER stress.

Indexed as

3' Untranslated RegionsATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2DNA-Binding ProteinsGene Expression ProfilingGene Expression RegulationHeLa CellsHistocompatibility Antigens Class IHumansMicroRNAsRegulatory Factor X Transcription FactorsTranscription FactorsUnfolded Protein ResponseX-Box Binding Protein 13' Untranslated RegionsATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2DNA-Binding ProteinsHistocompatibility Antigens Class IMicroRNAsMIRN346 microRNA, humanRegulatory Factor X Transcription FactorsTAP1 protein, humanTranscription FactorsX-Box Binding Protein 1XBP1 protein, human

Identifiers

PMID22002058
PMCPMC3308892
OpenAlexW2066604609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.