Evidence map›Paper›PMID 22001733›Full record

ArticleJournal of theoretical biology2012

Clustering in cell cycle dynamics with general response/signaling feedback.

Todd R Young, Bastien Fernandez, Richard Buckalew, Gregory Moses, Erik M Boczko

Abstract read
In one paragraph

Article in Journal of theoretical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Todd R YoungDepartment of Mathematics, Ohio University, Athens, OH, USA. youngt@ohio.edu
Bastien Fernandez
Richard Buckalew
Gregory Moses
Erik M Boczko

Funding

Dynamics and Bifurcations of Population Structures Induced by Cell Cycle FeedbackR01GM090207 · NIGMS · VANDERBILT UNIVERSITY · PI BOCZKO, ERIK MIKLOS · 2009 to 2012
$1.2M
NIGMS NIH HHS R01 GM090207NIGMS NIH HHS R01GM090207
6 · The paper itself

Abstract

Motivated by experimental and theoretical work on autonomous oscillations in yeast, we analyze ordinary differential equations models of large populations of cells with cell-cycle dependent feedback. We assume a particular type of feedback that we call responsive/signaling (RS), but do not specify a functional form of the feedback. We study the dynamics and emergent behavior of solutions, particularly temporal clustering and stability of clustered solutions. We establish the existence of certain periodic clustered solutions as well as "uniform" solutions and add to the evidence that cell-cycle dependent feedback robustly leads to cell-cycle clustering. We highlight the fundamental differences in dynamics between systems with negative and positive feedback. For positive feedback systems the most important mechanism seems to be the stability of individual isolated clusters. On the other hand we find that in negative feedback systems, clusters must interact with each other to reinforce coherence. We conclude from various details of the mathematical analysis that negative feedback is most consistent with observations in yeast experiments.

Indexed as

Models, BiologicalAnimalsBiological ClocksCell CycleCluster AnalysisFeedback, PhysiologicalSignal TransductionYeasts

Identifiers

PMID22001733
PMCPMC3216642

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.