Evidence map›Paper›PMID 22001110›Full record

ReviewSeminars in cell & developmental biology2012

Functions and regulation of the APOBEC family of proteins.

Harold C Smith, Ryan P Bennett, Ayse Kizilyer, William M McDougall, Kimberly M Prohaska

Open access · greenAbstract readReview
In one paragraph

Review in Seminars in cell & developmental biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 1 synthesis or guideline pooled it, 216 citations in OpenAlex.

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68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Harold C SmithDepartment of Biochemistry and Biophysics, University of Rochester, School of Medicine and Dentistry, Rochester, NY 14642, USA. harold.smith@rochester.edu
Ryan P Bennett
Ayse Kizilyer
William M McDougall
Kimberly M Prohaska
University of Rochester · USUniversity of Rochester Medical Center · US

Funding

Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Discovery of Chemical Probes for RNA-Binding Protein Host Defense FactorsR01GM110119 · NIGMS · OYAGEN, INC. · PI SMITH, HAROLD C · 2015 to 2017
$1.8M
Identification of Antagonists of the Molecular Chaperone Function of CBF betaR01GM110568 · NIGMS · OYAGEN, INC. · PI SMITH, HAROLD C · 2013 to 2015
$1.4M
METABOLIC REGULATION OF APOLIPOPROTEIN B MRNA EDITINGR01DK043739 · NIDDK · UNIVERSITY OF ROCHESTER · PI SMITH, HAROLD C · 1992 to 2003
$1.1M
Investigation of APOBEC3G/Vif Interactions by SAXS and X-ray CrystallographyR33AI076085 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2010 to 2012
$1.1M
The Role of mRNA Editing in B Cell DevelopmentR21AI054369 · NIAID · UNIVERSITY OF ROCHESTER · PI SMITH, HAROLD C · 2003 to 2004
$473k
Based deamination by CEM15 suppresses HIV-1 InfectivityR21AI058789 · NIAID · UNIVERSITY OF ROCHESTER · PI SMITH, HAROLD C · 2004 to 2005
$468k
Development of a Novel HIV/AIDS Therapeutic Activating the APOBEC3G Host DefenseR21AI095007 · NIAID · OYAGEN, INC. · PI SMITH, HAROLD C · 2011 to 2012
$462k
Investigation of APOBEC3G/Vif Interactions by SAXS and X-ray CrystallographyR21AI076085 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2008 to 2009
$424k
Development of a High Throughput Screen for Antagonists of Vif DimerizationR21NS067671 · NINDS · OYAGEN, INC. · PI SMITH, HAROLD C · 2009 to 2011
$161k
NIAID NIH HHS AI076085NIAID NIH HHS AI095007NIAID NIH HHS AI54369NIAID NIH HHS AI58789NIAID NIH HHS R21 AI054369NIAID NIH HHS R21 AI058789NIAID NIH HHS R21 AI076085NIAID NIH HHS R21 AI095007NIAID NIH HHS R33 AI076085NIDDK NIH HHS DK43739NIDDK NIH HHS R01 DK043739NIGMS NIH HHS GM068411NIGMS NIH HHS R01 GM110119NIGMS NIH HHS R01 GM110568NIGMS NIH HHS T32 GM068411NINDS NIH HHS NS067671NINDS NIH HHS R21 NS067671PHS HHS P30 078498
6 · The paper itself

Abstract

APOBEC1 is a cytidine deaminase that edits messenger RNAs and was the first enzyme in the APOBEC family to be functionally characterized. Under appropriate conditions APOBEC1 also deaminates deoxycytidine in single-stranded DNA (ssDNA). The other ten members of the APOBEC family have not been fully characterized however several have deoxycytidine deaminase activity on ssDNAs. Despite the nucleic acid substrate preferences of different APOBEC proteins, a common feature appears to be their intrinsic ability to bind to RNA as well as to ssDNA. RNA binding to APOBEC proteins together with protein-protein interactions, post-translation modifications and subcellular localization serve as biological modulators controlling the DNA mutagenic activity of these potentially genotoxic proteins.

Indexed as

AnimalsCytidine DeaminaseDNA, Single-StrandedHumansRNARNA EditingCytidine DeaminaseDNA, Single-StrandedRNA

Identifiers

PMID22001110
PMCPMC4017262
OpenAlexW2091939828

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.