Evidence map›Paper›PMID 21998726›Full record

ArticlePloS one2011

Generating a knockdown transgene against Drosophila heterochromatic Tim17b gene encoding mitochondrial translocase subunit.

Mikael Garabedian, Michael Jarnik, Elena Kotova, Alexei V Tulin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Mikael GarabedianFox Chase Cancer Center, Philadelphia, Pennsylvania, United States of America.
Michael Jarnik
Elena Kotova
Alexei V Tulin
Fox Chase Cancer Center · US

Funding

Poly ADP-ribose Polymerase in Chromatin and Transcriptional RegulationR01GM077452 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI TULIN, ALEXEI V · 2008 to 2012
$1.6M
NIGMS NIH HHS R01 GM077452
6 · The paper itself

Abstract

Heterochromatic regions of eukaryotic genomes contain multiple functional elements involved in chromosomal dynamics, as well as multiple housekeeping genes. Cytological and molecular peculiarities of heterochromatic loci complicate genetic studies based on standard approaches developed using euchromatic genes. Here, we report the development of an RNAi-based knockdown transgenic construct and red fluorescent reporter transgene for a small gene, Tim17b, which localizes in constitutive heterochromatin of Drosophila melanogaster third chromosome and encodes a mitochondrial translocase subunit. We demonstrate that Tim17b protein is required strictly for protein delivery to mitochondrial matrix. Knockdown of Tim17b completely disrupts functions of the mitochondrial translocase complex. Using fluorescent recovery after photobleaching assay, we show that Tim17b protein has a very stable localization in the membranes of the mitochondrial network and that its exchange rate is close to zero when compared with soluble proteins of mitochondrial matrix. These results confirm that we have developed comprehensive tools to study functions of heterochromatic Tim17b gene.

Indexed as

AnimalsApoptosisDrosophila melanogasterDrosophila ProteinsGene Knockdown TechniquesHeterochromatinHumansLuminescent ProteinsMaleMembrane Transport ProteinsMitochondriaProtein SubunitsProtein TransportRecombinant Fusion ProteinsRNA InterferenceTransgenesDrosophila Proteinsfluorescent protein 583HeterochromatinLuminescent ProteinsMembrane Transport ProteinsProtein SubunitsRecombinant Fusion ProteinsTim17b protein, Drosophila

Identifiers

PMID21998726
PMCPMC3188573
OpenAlexW2034167541

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.