Evidence map›Paper›PMID 21998309›Full record

ArticleThe Journal of biological chemistry2011

Functional characterization of alternative splicing in the C terminus of L-type CaV1.3 channels.

Bao Zhen Tan, Fengli Jiang, Ming Yeong Tan, Dejie Yu, Hua Huang, Yiru Shen, Tuck Wah Soong

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Impact of CaInternational journal of molecular sciences · 2026
    Review
  2. Article
  3. C-Terminus of CaCells · 2026
    Article
  4. Article
  5. Review
  6. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Inactivation of CaV1 and CaV2 channels.The Journal of general physiology · 2025
    Review
  9. Opto-chemogenetic inhibition of L-type CaCell reports methods · 2024
    Article
  10. Pathogenicity of de novo CACNA1D CaEuropean journal of human genetics : EJHG · 2024
    Article
  11. Review
  12. Clustering of CaJournal of neurochemistry · 2023
    Article
  13. Article
  14. Pathophysiology of CaFrontiers in physiology · 2023
    Review
  15. CACNA1D-Related Channelopathies: From Hypertension to Autism.Handbook of experimental pharmacology · 2023
    Review
  16. Whole Exome Sequencing Identifies a Heterozygous Variant in the Cav1.3 GeneInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Voltage-Gated CaFrontiers in synaptic neuroscience · 2021
    Review
  20. The Involvement of CaFrontiers in neural circuits · 2021
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bao Zhen TanDepartment of Physiology, Yong Loo Lin School Medicine, National University of Singapore, Singapore 117597; NUS Graduate School for Integrative Engineering and Science, National University of Singapore, Singapore 117597.
Fengli JiangDepartment of Physiology, Yong Loo Lin School Medicine, National University of Singapore, Singapore 117597.
Ming Yeong TanDepartment of Physiology, Yong Loo Lin School Medicine, National University of Singapore, Singapore 117597.
Dejie YuDepartment of Physiology, Yong Loo Lin School Medicine, National University of Singapore, Singapore 117597.
Hua HuangDepartment of Physiology, Yong Loo Lin School Medicine, National University of Singapore, Singapore 117597; NUS Graduate School for Integrative Engineering and Science, National University of Singapore, Singapore 117597.
Yiru ShenNational Neuroscience Institute, Singapore 308433.
Tuck Wah SoongDepartment of Physiology, Yong Loo Lin School Medicine, National University of Singapore, Singapore 117597; NUS Graduate School for Integrative Engineering and Science, National University of Singapore, Singapore 117597; National Neuroscience Institute, Singapore 308433. Electronic address: phsstw@nus.edu.sg.

Funding

EXCITABILITY, SYNAPTIC FUNCTION OF COCHLEAR HAIR CELLSR01DC000276 · NIDCD · UNIVERSITY OF COLORADO DENVER · PI FUCHS, PAUL ALBERT · 1989 to 2010
$4.2M
NIDCD NIH HHS R01 DC000276NIDCD NIH HHS R01DC00276
6 · The paper itself

Abstract

Ca(V)1.3 channels are unique among the high voltage-activated Ca(2+) channel family because they activate at the most negative potentials and display very rapid calcium-dependent inactivation. Both properties are of crucial importance in neurons of the suprachiasmatic nucleus and substantia nigra, where the influx of Ca(2+) ions at subthreshold membrane voltages supports pacemaking function. Previously, alternative splicing in the Ca(V)1.3 C terminus gives rise to a long (Ca(V)1.3(42)) and a short form (Ca(V)1.3(42A)), resulting in a pronounced activation at more negative voltages and faster inactivation in the latter. It was further shown that the C-terminal modulator in the Ca(V)1.3(42) isoforms modulates calmodulin binding to the IQ domain. Using splice variant-specific antibodies, we determined that protein localization of both splice variants in different brain regions were similar. Using the transcript-scanning method, we further identified alternative splicing at four loci in the C terminus of Ca(V)1.3 channels. Alternative splicing of exon 41 removes the IQ motif, resulting in a truncated Ca(V)1.3 protein with diminished inactivation. Splicing of exon 43 causes a frameshift and exhibits a robust inactivation of similar intensity to Ca(V)1.3(42A). Alternative splicing of exons 44 and 48 are in-frame, altering interaction of the distal modulator with the IQ domain and tapering inactivation slightly. Thus, alternative splicing in the C terminus of Ca(V)1.3 channels modulates its electrophysiological properties, which could in turn alter neuronal firing properties and functions.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBrainCalcium ChannelsCalcium Channels, L-TypeElectrophysiologyHEK293 CellsHumansMiceMice, Inbred C57BLMicroscopy, FluorescenceMolecular Sequence DataProtein Structure, TertiaryRatsSequence Homology, Amino AcidCACNA1D protein, humanCacna1d protein, mouseCacna1d protein, ratCalcium ChannelsCalcium Channels, L-Type

Identifiers

PMID21998309
PMCPMC3234967

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.