Evidence map›Paper›PMID 21998308›Full record

ArticleThe Journal of biological chemistry2011

Comparative metabolic flux profiling of melanoma cell lines: beyond the Warburg effect.

David A Scott, Adam D Richardson, Fabian V Filipp, Christine A Knutzen, Gary G Chiang, Ze'ev A Ronai, Andrei L Osterman, Jeffrey W Smith

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 221 papers.

0numbers the graph read from it
0cells of the map it votes in
221citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

221 citing papers in PubMed, 318 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Mitochondrial bioenergetics and networks in melanoma: an update.Apoptosis : an international journal on programmed cell death · 2025
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Metabolic Reprogramming in Melanoma: An Epigenetic Point of View.Pharmaceuticals (Basel, Switzerland) · 2025
    Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

161 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

David A ScottCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Adam D RichardsonCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Fabian V FilippCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Christine A KnutzenCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Gary G ChiangCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Ze'ev A RonaiCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Andrei L OstermanCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037. Electronic address: osterman@sanfordburnham.org.
Jeffrey W SmithCancer Research Center, Sanford-Burnham Medical Research Institute, La Jolla, California 92037.
Cancer Research Center · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Tumor Assessment CoreP01CA128814 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SMITH, JEFFREY W · 2009 to 2020
$19.1M
Tumor pyruvate kinase as key regulator of cancer metabolismR00CA154887 · NCI · UNIVERSITY OF CALIFORNIA, MERCED · PI FILIPP, FABIAN VOLKER · 2012 to 2014
$725k
Functional Metabolomics and Metabolic Flux Analysis in CancerR21CA147978 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RICHARDSON, ADAM DAVID · 2010 to 2011
$449k
Tumor pyruvate kinase as key regulator of cancer metabolismK99CA154887 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI FILIPP, FABIAN VOLKER · 2011 to 2012
$177k
NCI NIH HHS CA-128814NCI NIH HHS CA-147978NCI NIH HHS CA-154887NCI NIH HHS K99 CA154887NCI NIH HHS P01 CA128814NCI NIH HHS R00 CA154887NCI NIH HHS R21 CA147978
6 · The paper itself

Abstract

Metabolic rewiring is an established hallmark of cancer, but the details of this rewiring at a systems level are not well characterized. Here we acquire this insight in a melanoma cell line panel by tracking metabolic flux using isotopically labeled nutrients. Metabolic profiling and flux balance analysis were used to compare normal melanocytes to melanoma cell lines in both normoxic and hypoxic conditions. All melanoma cells exhibited the Warburg phenomenon; they used more glucose and produced more lactate than melanocytes. Other changes were observed in melanoma cells that are not described by the Warburg phenomenon. Hypoxic conditions increased fermentation of glucose to lactate in both melanocytes and melanoma cells (the Pasteur effect). However, metabolism was not strictly glycolytic, as the tricarboxylic acid (TCA) cycle was functional in all melanoma lines, even under hypoxia. Furthermore, glutamine was also a key nutrient providing a substantial anaplerotic contribution to the TCA cycle. In the WM35 melanoma line glutamine was metabolized in the "reverse" (reductive) direction in the TCA cycle, particularly under hypoxia. This reverse flux allowed the melanoma cells to synthesize fatty acids from glutamine while glucose was primarily converted to lactate. Altogether, this study, which is the first comprehensive comparative analysis of metabolism in melanoma cells, provides a foundation for targeting metabolism for therapeutic benefit in melanoma.

Indexed as

Cell Line, TumorCitric Acid CycleFermentationGas Chromatography-Mass SpectrometryGlucoseGlutamineGlycolysisHumansHypoxiaKetoglutaric AcidsLactic AcidMelanocytesMelanomaModels, BiologicalSkin NeoplasmsGlucoseGlutamineKetoglutaric AcidsLactic Acid

Identifiers

PMID21998308
PMCPMC3234981
OpenAlexW1976603231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.