Evidence map›Paper›PMID 21998098›Full record

ArticleProtein science : a publication of the Protein Society2011

The catalase activity of diiron adenine deaminase.

Siddhesh S Kamat, Gregory P Holmes-Hampton, Ashima Bagaria, Desigan Kumaran, Shane E Tichy, Tarun Gheyi, Xiaojing Zheng, Kevin Bain, Chris Groshong, Spencer Emtage and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 84% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Biochemical Characterization ofFrontiers in bioengineering and biotechnology · 2018
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Siddhesh S KamatDepartment of Chemistry, Texas A&M University, College Station, Texas 77843-3012, USA.
Gregory P Holmes-Hampton
Ashima Bagaria
Desigan Kumaran
Shane E Tichy
Tarun Gheyi
Xiaojing Zheng
Kevin Bain
Chris Groshong
Spencer Emtage
J Michael Sauder
Stephen K Burley
Subramanyam Swaminathan
Paul A Lindahl
Frank M Raushel
Center Point · USTexas A&M University · USBrookhaven National Laboratory · USAgilent Technologies (United States) · USCase Western Reserve University · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
Theoretical and Computational ApproachesP01GM071790 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI RAUSHEL, FRANK M. · 2004 to 2013
$15.5M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
BIOINORGANIC CHEMISTRY OF CARBON MONOXIDE DEHYDROGENASER01GM046441 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI LINDAHL, PAUL A. · 1993 to 2011
$2.7M
Bioorganic Chemistry of Carbon Monoxide DehydrogenaseR56GM046441 · NIGMS · TEXAS A&M UNIVERSITY · PI LINDAHL, PAUL A. · 2007 to 2007
$267k
NIBIB NIH HHS P30 EB009998NIGMS NIH HHS GM 46441NIGMS NIH HHS GM 71790NIGMS NIH HHS GM 74945
6 · The paper itself

Abstract

Adenine deaminase (ADE) from the amidohydrolase superfamily (AHS) of enzymes catalyzes the conversion of adenine to hypoxanthine and ammonia. Enzyme isolated from Escherichia coli was largely inactive toward the deamination of adenine. Molecular weight determinations by mass spectrometry provided evidence that multiple histidine and methionine residues were oxygenated. When iron was sequestered with a metal chelator and the growth medium supplemented with Mn(2+) before induction, the post-translational modifications disappeared. Enzyme expressed and purified under these conditions was substantially more active for adenine deamination. Apo-enzyme was prepared and reconstituted with two equivalents of FeSO(4). Inductively coupled plasma mass spectrometry and Mössbauer spectroscopy demonstrated that this protein contained two high-spin ferrous ions per monomer of ADE. In addition to the adenine deaminase activity, [Fe(II) /Fe(II) ]-ADE catalyzed the conversion of H(2)O(2) to O(2) and H(2)O. The values of k(cat) and k(cat)/K(m) for the catalase activity are 200 s(-1) and 2.4 × 10(4) M(-1) s(-1), respectively. [Fe(II)/Fe(II)]-ADE underwent more than 100 turnovers with H(2)O(2) before the enzyme was inactivated due to oxygenation of histidine residues critical for metal binding. The iron in the inactive enzyme was high-spin ferric with g(ave) = 4.3 EPR signal and no evidence of anti-ferromagnetic spin-coupling. A model is proposed for the disproportionation of H(2)O(2) by [Fe(II)/Fe(II)]-ADE that involves the cycling of the binuclear metal center between the di-ferric and di-ferrous oxidation states. Oxygenation of active site residues occurs via release of hydroxyl radicals. These findings represent the first report of redox reaction catalysis by any member of the AHS.

Indexed as

AminohydrolasesCatalaseEscherichia coliHydrogen PeroxideHydroxyl RadicalIronModels, MolecularMutagenesisOxidation-ReductionSuperoxidesadenine deaminaseAminohydrolasesCatalaseHydrogen PeroxideHydroxyl RadicalIronSuperoxides

Identifiers

PMID21998098
PMCPMC3302651
OpenAlexW2127603541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.