Evidence map›Paper›PMID 21997368›Full record

ArticleAutophagy2011

A comprehensive glossary of autophagy-related molecules and processes (2nd edition).

Daniel J Klionsky, Eric H Baehrecke, John H Brumell, Charleen T Chu, Patrice Codogno, Ana Marie Cuervo, Jayanta Debnath, Vojo Deretic, Zvulun Elazar, Eeva-Liisa Eskelinen and 13 more

Open access · bronzeAbstract readDictionary
In one paragraph

Article in Autophagy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed, 3 pooled it
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 3 syntheses or guidelines pooled it, 290 citations in OpenAlex.

  1. Guideline
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91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 20 institutions in 14 countries.

Daniel J KlionskyLife Sciences Institute, and Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, USA. klionsky@umich.edu
Eric H Baehrecke
John H Brumell
Charleen T Chu
Patrice Codogno
Ana Marie Cuervo
Jayanta Debnath
Vojo Deretic
Zvulun Elazar
Eeva-Liisa Eskelinen
Steven Finkbeiner
Juan Fueyo-Margareto
David Gewirtz
Marja Jäättelä
Guido Kroemer
Beth Levine
Thomas J Melia
Noboru Mizushima
David C Rubinsztein
Anne Simonsen
Andrew Thorburn
Michael Thumm
Sharon A Tooze
Biologie Labor · CHCalifornia Liver Research Institute · USCancer Research UK · GBDanish Cancer Society · DKDenver School of Nursing · USGladstone Institutes · USHospital for Sick Children · CAHoward Hughes Medical Institute · USInserm · FRInstitute for Medical Research · MYInstitute of Basic Medical Sciences of the Chinese Academy of Medical SciencesScripps MD Anderson Cancer Center · USTokyo Medical and Dental University · JPUniversité Paris Cité · FRUniversity of California, San Francisco · USUniversity of Helsinki · FIUniversity of Massachusetts Chan Medical School · USUniversity of Michigan · USUniversity of New Haven · USUniversity of New Mexico · US

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
Pattern Recognition Receptors and Autophagy in Mtb Control in AIDSR01AI042999 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI DERETIC, VOJO P · 1998 to 2017
$6.6M
Pattern Recognition Receptors and Autophagy in Mtb Control in AIDSR37AI042999 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI VOJO P DERETIC · 2018 to 2026
$4.7M
Genetic Regulation of Autophagic Cell DeathR01GM079431 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BAEHRECKE, ERIC H · 2007 to 2019
$4.4M
Function of Atg6 and autophagy in growth controlR01CA159314 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BAEHRECKE, ERIC H · 2011 to 2015
$1.7M
NCI NIH HHS R01 CA159314NIAID NIH HHS R01 AI042999NIAID NIH HHS R37 AI042999NIGMS NIH HHS R01 GM053396NIGMS NIH HHS R01 GM079431
6 · The paper itself

Abstract

The study of autophagy is rapidly expanding, and our knowledge of the molecular mechanism and its connections to a wide range of physiological processes has increased substantially in the past decade. The vocabulary associated with autophagy has grown concomitantly. In fact, it is difficult for readers--even those who work in the field--to keep up with the ever-expanding terminology associated with the various autophagy-related processes. Accordingly, we have developed a comprehensive glossary of autophagy-related terms that is meant to provide a quick reference for researchers who need a brief reminder of the regulatory effects of transcription factors and chemical agents that induce or inhibit autophagy, the function of the autophagy-related proteins, and the roles of accessory components and structures that are associated with autophagy.

Indexed as

AutophagySignal TransductionProteinsProteins

Identifiers

PMID21997368
PMCPMC3359482
OpenAlexW1978397479

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.