Evidence map›Paper›PMID 21995386›Full record

ArticleThe New England journal of medicine2011

Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts.

E Papaemmanuil, M Cazzola, J Boultwood, L Malcovati, P Vyas, D Bowen, A Pellagatti, J S Wainscoat, E Hellstrom-Lindberg, C Gambacorti-Passerini and 39 more

4 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in The New England journal of medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 4 registered trials, which are not on this map. Cited by 691 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
691citing papers in PubMed, 1 pooled it
55.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02459743 unknown statusnot on this mapstarted 2015, after this paper: background citation

Molecular Disease Profile of Haematological Malignancies. A Prospective Registry Study by the Rete Ematologica Lombarda (REL) Clinical Network

Typeobservational_patient_registrySponsorUniversity of PaviaRan2015 to 2018Enrolled1,000ConditionsHematological Malignancies
NCT03907553 completednot on this map

Aging of Hematopoietic Stem Cells - Molecular Architecture of Marrow Dysplasia and Clinical Contribution of Ineffective Hematopoiesis to Frailty in the Elderly

TypeobservationalSponsorIstituto Clinico HumanitasRan2003Enrolled5,000ConditionsAnemia, Clonal HematopoiesisArmstargeted genome sequencing
NCT04174547 unknown statusnot on this mapstarted 2019, after this paper: background citation

An Integrated European Platform to Conduct Translational Studies in Myelodysplastic Syndromes Based on the EuroBloodNet Infrastructure

TypeobservationalSponsorIstituto Clinico HumanitasRan2019 to 2022Enrolled8,670ConditionsMyelodysplastic Syndromes
NCT04889729 unknown statusnot on this mapstarted 2021, after this paper: background citation

Genomic and Personalized Medicine for All (GENOMED4ALL): Application of Artificial Intelligence to Improve Disease Classification and Prognosis in Myelodysplastic Syndrome.

TypeobservationalSponsorIstituto Clinico HumanitasRan2021 to 2024Enrolled13,284ConditionsMyelodysplastic Syndromes
3 · Its place in the literature

Who cites it

691 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,210 citations in OpenAlex.

  1. Guideline
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  6. DecipheringGenes · 2026
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  9. Splicing-driven post-translational dysregulation: a new frontier for precision cancer medicine and immunotherapy.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
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  15. DifferentCancers · 2026
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631 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

49 authors at 8 institutions in 6 countries.

E PapaemmanuilCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
M Cazzola
J Boultwood
L Malcovati
P Vyas
D Bowen
A Pellagatti
J S Wainscoat
E Hellstrom-Lindberg
C Gambacorti-Passerini
A L Godfrey
I Rapado
A Cvejic
R Rance
C McGee
P Ellis
L J Mudie
P J Stephens
S McLaren
C E Massie
P S Tarpey
I Varela
S Nik-Zainal
H R Davies
A Shlien
D Jones
K Raine
J Hinton
A P Butler
J W Teague
E J Baxter
J Score
A Galli
M G Della Porta
E Travaglino
M Groves
S Tauro
N C Munshi
K C Anderson
A El-Naggar
A Fischer
V Mustonen
A J Warren
N C P Cross
A R Green
P A Futreal
M R Stratton
P J Campbell
Chronic Myeloid Disorders Working Group of the International Cancer Genome Consortium
International Breast Cancer Study Group · CHWellcome Sanger Institute · GBIstituti di Ricovero e Cura a Carattere Scientifico · ITUniversity of Cambridge · GBUniversity of Oxford · GBUniversity of Dundee · GBHarvard University Press · USUniversity of Southampton · GB

Funding

Targeting Myeloma Cell-Host Bone Marrow InteractionsP01CA078378 · NCI · DANA-FARBER CANCER INSTITUTE · PI RITZ, JEROME · 1998 to 2014
$26.2M
Homologous Recombination Mediates Genomic Instability and Progression in MyelomaR01CA124929 · NCI · DANA-FARBER CANCER INST · PI MUNSHI, NIKHIL C. · 2008 to 2012
$1.8M
Medical Research Council G0800784Medical Research Council G1000729Medical Research Council MC_U105161083NCI NIH HHS P01 CA078378NCI NIH HHS R01 CA124929PHS HHS P01-155249PHS HHS P01-78378PHS HHS P50-100007PHS HHS R01-124929Wellcome Trust 077012/Z/05/ZWellcome Trust 088340Wellcome Trust 093867Wellcome Trust WT088340MAWorldwide Cancer Research 08-0183
6 · The paper itself

Abstract

backgroundMyelodysplastic syndromes are a diverse and common group of chronic hematologic cancers. The identification of new genetic lesions could facilitate new diagnostic and therapeutic strategies.

methodsWe used massively parallel sequencing technology to identify somatically acquired point mutations across all protein-coding exons in the genome in 9 patients with low-grade myelodysplasia. Targeted resequencing of the gene encoding RNA splicing factor 3B, subunit 1 (SF3B1), was also performed in a cohort of 2087 patients with myeloid or other cancers.

resultsWe identified 64 point mutations in the 9 patients. Recurrent somatically acquired mutations were identified in SF3B1. Follow-up revealed SF3B1 mutations in 72 of 354 patients (20%) with myelodysplastic syndromes, with particularly high frequency among patients whose disease was characterized by ring sideroblasts (53 of 82 [65%]). The gene was also mutated in 1 to 5% of patients with a variety of other tumor types. The observed mutations were less deleterious than was expected on the basis of chance, suggesting that the mutated protein retains structural integrity with altered function. SF3B1 mutations were associated with down-regulation of key gene networks, including core mitochondrial pathways. Clinically, patients with SF3B1 mutations had fewer cytopenias and longer event-free survival than patients without SF3B1 mutations.

conclusionsMutations in SF3B1 implicate abnormalities of messenger RNA splicing in the pathogenesis of myelodysplastic syndromes. (Funded by the Wellcome Trust and others.).

Indexed as

Point MutationErythrocytesGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansMyelodysplastic SyndromesPhenotypePhosphoproteinsRibonucleoprotein, U2 Small NuclearRNA Splicing FactorsPhosphoproteinsRibonucleoprotein, U2 Small NuclearRNA Splicing FactorsSF3B1 protein, human

Identifiers

PMID21995386
PMCPMC3322589
OpenAlexW2144892629

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.