Evidence map›Paper›PMID 21995315›Full record

ArticleBiochemistry2011

Preparation of an activated rhodopsin/transducin complex using a constitutively active mutant of rhodopsin.

Guifu Xie, Aaron M D'Antona, Patricia C Edwards, Maikel Fransen, Jorg Standfuss, Gebhard F X Schertler, Daniel D Oprian

Abstract readEvaluation Study
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Disrupted Plasma Membrane Protein Homeostasis in aThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  2. Article
  3. Ligand channel in pharmacologically stabilized rhodopsin.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Decay of an active GPCR: Conformational dynamics govern agonist rebinding and persistence of an active, yet empty, receptor state.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Relocating the active-site lysine in rhodopsin and implications for evolution of retinylidene proteins.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. When detergent meets bilayer: birth and coming of age of lipid bicelles.Progress in nuclear magnetic resonance spectroscopy · 2013
    Review
  14. Review
  15. G protein-coupled receptors--recent advances.Acta biochimica Polonica · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guifu XieDepartment of Biochemistry, Brandeis University, Waltham, Massachusetts 02454, United States.
Aaron M D'Antona
Patricia C Edwards
Maikel Fransen
Jorg Standfuss
Gebhard F X Schertler
Daniel D Oprian

Funding

Quantitative Neuroscience: Tools for Bridging Levels of AnalysisT32NS007292 · NINDS · BRANDEIS UNIVERSITY · PI GINA G TURRIGIANO · 1986 to 2026
$12.7M
STRUCTURE/FUNCTION STUDIES OF RHODOPSINR01EY007965 · NEI · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1989 to 2017
$6.2M
Structural and Biochemical Studies of the Metarhodopsin II-Transducin ComplexF32EY018542 · NEI · BRANDEIS UNIVERSITY · PI D'ANTONA, AARON M · 2008 to 2008
$47k
NEI NIH HHS EY007965NEI NIH HHS EY18542NEI NIH HHS F32 EY018542NEI NIH HHS R01 EY007965NINDS NIH HHS T32 NS007292
6 · The paper itself

Abstract

The interaction of rhodopsin and transducin has been the focus of study for more than 30 years, but only recently have efforts to purify an activated complex in detergent solution materialized. These efforts have used native rhodopsin isolated from bovine retina and employed either sucrose density gradient centrifugation or size exclusion chromatography to purify the complex. While there is general agreement on most properties of the activated complex, subunit stoichiometry is not yet settled, with rhodopsin/transducin molar ratios of both 2/1 and 1/1 reported. In this report, we introduce methods for preparation of the complex that include use of recombinant rhodopsin, so as to take advantage of mutations that confer constitutive activity and enhanced thermal stability on the protein, and immunoaffinity chromatography for purification of the complex. We show that chromatography on ConA-Sepharose can substitute for the immunoaffinity column and that bicelles can be used instead of detergent solution. We demonstrate the following: that rhodopsin has a covalently bound all-trans-retinal chromophore and therefore corresponds to the active metarhodopin II state; that transducin has an empty nucleotide-binding pocket; that the isolated complex is active and dissociates upon addition of guanine nucleotide; and finally that the stoichiometry corresponds reproducibly to a 1/1 molar ratio of rhodopsin to transducin.

Indexed as

MutationAnalytic Sample Preparation MethodsAnimalsCattleCell LineEnzyme ActivationHumansNucleotidesProtein BindingRetinaRhodopsinTransducinNucleotidesRhodopsinTransducin

Identifiers

PMID21995315
PMCPMC3390202

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.