Evidence map›Paper›PMID 21994654›Full record

ArticleViruses2010

Complete genomic sequence of bacteriophage felix o1.

Jean M Whichard, Lee A Weigt, Douglas J Borris, Ling Ling Li, Qing Zhang, Vivek Kapur, F William Pierson, Erika J Lingohr, Yi-Min She, Andrew M Kropinski and 1 more

Abstract read
In one paragraph

Article in Viruses, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Genome sequence ofMicrobiology resource announcements · 2026
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  9. Article
  10. A novel lytic phage infecting MDRFrontiers in microbiology · 2024
    Article
  11. Article
  12. Article
  13. Phages and Enzybiotics in Food Biopreservation.Molecules (Basel, Switzerland) · 2021
    Review
  14. Article
  15. Comparative Analysis ofAntibiotics (Basel, Switzerland) · 2021
    Article
  16. Isolation and Characterization of a NovelFrontiers in microbiology · 2021
    Article
  17. Characterization ofViruses · 2020
    Article
  18. mSystems · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jean M WhichardMailstop G29, Centers for Disease Control and Prevention; 1600 Clifton Road, Atlanta, GA 30329, USA.
Lee A WeigtSmithsonian National Institution, National Museum in Natural History, MRC 534, Washington, DC 20560, USA.
Douglas J BorrisAbbot Point of Care, 185 Corkstown Road, Ottawa, ON, K2H 8V4, Canada.
Ling Ling LiPennsylvania State University, Department of Veterinary and Biomedical Sciences, 204 Wartick Laboratory, University Park, PA 16802 , USA.
Qing ZhangFred Hutchinson Cancer Research Center, 1100 Fairview Ave. N. Seattle, WA 98109, USA.
Vivek KapurPennsylvania State University, 115 Henning Bldg., University Park, PA 16802, USA.
F William PiersonVA-MD Regional College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Duck Pond Drive (0442), Blacksburg, Virginia 24061, USA.
Erika J LingohrPublic Health Agency of Canada, Laboratory for Foodborne Zoonoses, Guelph, Ontario N1G 3W4, Canada.
Yi-Min SheCentre for Biologics Research, Health Canada, Room D159, Frederick G. Banting Building 251 Sir Frederick Banting Driveway, Tunney's Pasture, Ottawa, ON K1A 0K9, Canada.
Andrew M KropinskiPublic Health Agency of Canada, Laboratory for Foodborne Zoonoses, Guelph, Ontario N1G 3W4, Canada.
Nammalwar SriranganathanCenter for Molecular Medicine and Infectious Disease; 1410 Prices Fork Road; Blacksburg, VA 24061-0342, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Escherichia coli phage wV8. Proteomic analysis indentified structural proteins: Gp23, Gp36 (major tail protein), Gp49, Gp53, Gp54, Gp55, Gp57, Gp58 (major capsid protein), Gp59, Gp63, Gp64, Gp67, Gp68, Gp69, Gp73, Gp74 and Gp77 (tail fiber). Based on phage-host codon differences, 7 tRNAs could affect translation rate during infection. Introns, holin-lysin cassettes, bacterial toxin homologs and host RNA polymerase-modifying genes were absent.

Indexed as

bacteriophagebioinformaticsDNA sequenceFelix O1MyoviridaeSalmonella

Identifiers

PMID21994654
PMCPMC3185647

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.