Evidence map›Paper›PMID 21990429›Full record

ArticleScience signaling2011

Load-induced modulation of signal transduction networks.

Peng Jiang, Alejandra C Ventura, Eduardo D Sontag, Sofia D Merajver, Alexander J Ninfa, Domitilla Del Vecchio

Abstract read
In one paragraph

Article in Science signaling, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Control theory meets synthetic biology.Journal of the Royal Society, Interface · 2016
    Review
  11. Review
  12. Retroactivity in the Context of Modularly Structured Biomolecular Systems.Frontiers in bioengineering and biotechnology · 2015
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Modular composition of gene transcription networks.PLoS computational biology · 2014
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Peng JiangDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109-0606, USA.
Alejandra C Ventura
Eduardo D Sontag
Sofia D Merajver
Alexander J Ninfa
Domitilla Del Vecchio

Funding

Structure/function analysis of the E. coli NIR/NRII signal transduction systemR01GM059637 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NINFA, ALEXANDER J. · 2001 to 2009
$2.3M
Transient behaviors of adapting biological systemsR01GM100473 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI SONTAG, EDUARDO · 2011 to 2014
$1.6M
Collaborative Research: Multistability in Biological NetworksR01GM086881 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CRACIUN, GHEORGHE · 2008 to 2012
$1.5M
NIGMS NIH HHS 1R01GM086881NIGMS NIH HHS 1R01GM100473-01NIGMS NIH HHS GM059637NIGMS NIH HHS R01 GM059637NIGMS NIH HHS R01 GM086881NIGMS NIH HHS R01 GM100473
6 · The paper itself

Abstract

Biological signal transduction networks are commonly viewed as circuits that pass along information--in the process amplifying signals, enhancing sensitivity, or performing other signal-processing tasks--to transcriptional and other components. Here, we report on a "reverse-causality" phenomenon, which we call load-induced modulation. Through a combination of analytical and experimental tools, we discovered that signaling was modulated, in a surprising way, by downstream targets that receive the signal and, in doing so, apply what in physics is called a load. Specifically, we found that non-intuitive changes in response dynamics occurred for a covalent modification cycle when load was present. Loading altered the response time of a system, depending on whether the activity of one of the enzymes was maximal and the other was operating at its minimal rate or whether both enzymes were operating at submaximal rates. These two conditions, which we call "limit regime" and "intermediate regime," were associated with increased or decreased response times, respectively. The bandwidth, the range of frequency in which the system can process information, decreased in the presence of load, suggesting that downstream targets participate in establishing a balance between noise-filtering capabilities and a circuit's ability to process high-frequency stimulation. Nodes in a signaling network are not independent relay devices, but rather are modulated by their downstream targets.

Indexed as

Models, BiologicalAllosteric RegulationEnzymesEscherichia coliFeedback, PhysiologicalNucleotidyltransferasesPII Nitrogen Regulatory ProteinsSignal TransductionSystems BiologyTime FactorsEnzymesNucleotidyltransferasesPII Nitrogen Regulatory Proteinsregulatory protein uridylyltransferase

Identifiers

PMID21990429
PMCPMC8760836

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.