Evidence map›Paper›PMID 21989405›Full record

ArticleNucleic acids research2012

Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations.

Isabel Peixeiro, Ângela Inácio, Cristina Barbosa, Ana Luísa Silva, Stephen A Liebhaber, Luísa Romão

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 111 citations in OpenAlex.

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  18. iScience · 2021
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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Isabel PeixeiroDepartamento de Genética, Instituto Nacional de Saúde Dr. Ricardo Jorge, 1649-016 Lisboa, Portugal.
Ângela Inácio
Cristina Barbosa
Ana Luísa Silva
Stephen A Liebhaber
Luísa Romão
University of Pennsylvania · USUniversity of Lisbon · PTNational Institute of Health Dr. Ricardo Jorge · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonsense-mediated mRNA decay (NMD) is a surveillance pathway that recognizes and rapidly degrades mRNAs containing premature termination codons (PTC). The strength of the NMD response appears to reflect multiple determinants on a target mRNA. We have previously reported that mRNAs containing PTCs in close proximity to the translation initiation codon (AUG-proximal PTCs) can substantially evade NMD. Here, we explore the mechanistic basis for this NMD resistance. We demonstrate that translation termination at an AUG-proximal PTC lacks the ribosome stalling that is evident in an NMD-sensitive PTC. This difference is associated with demonstrated interactions of the cytoplasmic poly(A)-binding protein 1, PABPC1, with the cap-binding complex subunit, eIF4G and the 40S recruitment factor eIF3 as well as the ribosome release factor, eRF3. These interactions, in combination, underlie critical 3'-5' linkage of translation initiation with efficient termination at the AUG-proximal PTC and contribute to an NMD-resistant PTC definition at an early phase of translation elongation.

Indexed as

Codon, NonsenseNonsense Mediated mRNA DecayCodon, InitiatorCodon, TerminatorEukaryotic Initiation Factor-3Eukaryotic Initiation Factor-4GEukaryotic Initiation FactorsHeLa CellsHumansPeptide Chain Initiation, TranslationalPeptide Chain Termination, TranslationalPeptide Termination FactorsPoly(A)-Binding Protein IRibosomesRNA-Binding ProteinsRNA, MessengerCodon, InitiatorCodon, NonsenseCodon, TerminatorEukaryotic Initiation Factor-3Eukaryotic Initiation Factor-4GEukaryotic Initiation Factorspeptide-chain-release factor 3Peptide Termination FactorsPoly(A)-Binding Protein IRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID21989405
PMCPMC3273812
OpenAlexW2024371767

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.