Evidence map›Paper›PMID 21987678›Full record

ArticleArchives of ophthalmology (Chicago, Ill. : 1960)2011

Association of pathogenic mutations in TULP1 with retinitis pigmentosa in consanguineous Pakistani families.

Muhammad Iqbal, Muhammad Asif Naeem, S Amer Riazuddin, Shahbaz Ali, Tahir Farooq, Zaheeruddin A Qazi, Shaheen N Khan, Tayyab Husnain, Saima Riazuddin, Paul A Sieving and 2 more

Abstract read
In one paragraph

Article in Archives of ophthalmology (Chicago, Ill. : 1960), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Novel mutations inInternational journal of ophthalmology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Muhammad IqbalNational Center of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Muhammad Asif Naeem
S Amer Riazuddin
Shahbaz Ali
Tahir Farooq
Zaheeruddin A Qazi
Shaheen N Khan
Tayyab Husnain
Saima Riazuddin
Paul A Sieving
J Fielding Hejtmancik
Sheikh Riazuddin
University of the Punjab · PK

Funding

Inherited Ocular DiseasesZIAEY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 2009 to 2025
$27.0M
INHERITED OCULAR DISEASESZ01EY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 1991 to 2008
$4.8M
Intramural NIH HHS Z01 EY000272
6 · The paper itself

Abstract

objectiveTo identify pathogenic mutations responsible for autosomal recessive retinitis pigmentosa in 5 consanguineous Pakistani families.

methodsAffected individuals in the families underwent a detailed ophthalmological examination that consisted of fundus photography and electroretinography. Blood samples were collected from all participating family members, and genomic DNA was extracted. A genome-wide linkage scan was performed, followed by exclusion analyses among our cohort of nuclear consanguineous families with microsatellite markers spanning the TULP1 locus on chromosome 6p. Two-point logarithm of odds scores were calculated, and all coding exons of TULP1 were sequenced bidirectionally.

resultsThe results of ophthalmological examinations among affected individuals in these 5 families were suggestive of retinitis pigmentosa. The genome-wide linkage scan localized the disease interval to chromosome 6p, harboring TULP1 in 1 of 5 families, and sequential analyses identified a single base pair substitution in TULP1 that results in threonine to alanine substitution (p.T380A). Subsequently, we investigated our entire cohort of families with autosomal recessive retinitis pigmentosa and identified 4 additional families with linkage to chromosome 6p, all of them harboring a single base pair substitution in TULP1 that results in lysine to arginine substitution (p.K489R). Results of single-nucleotide polymorphism haplotype analyses were suggestive of a common founder in these 4 families.

conclusionPathogenic mutations in TULP1 are responsible for the autosomal recessive retinitis pigmentosa phenotype in these consanguineous Pakistani families, with a single ancestral mutation in TULP1 causing the disease phenotype in 4 of 5 families. CLINICAL RELEVANCE: Clinical and molecular characterization of pathogenic mutations in TULP1 will increase our understanding of retinitis pigmentosa at a molecular level.

Indexed as

ConsanguinityMutationPolymorphism, Single NucleotideChromosomes, Human, Pair 6DNA Mutational AnalysisElectroretinographyEye ProteinsFemaleGenetic LinkageGenome-Wide Association StudyGenotypeHumansLod ScoreMaleMicrosatellite RepeatsPakistanEye ProteinsTULP1 protein, human

Identifiers

PMID21987678
PMCPMC3463811
OpenAlexW2135534054

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.