ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and -susceptible alleles.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.
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59 citing papers in PubMed, 117 citations in OpenAlex.
- Transcription-Aided Selection (TAS) for Crop Disease Resistance: Strategy and Evidence.International journal of molecular sciences · 2024Article
- A single-nucleotide insertion in Rxp confers durable resistance to bacterial pustule in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Insights into bs5 resistance mechanisms in pepper against Xanthomonas euvesicatoria through transcriptome profiling.BMC genomics · 2024Article
- Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.).The plant genome · 2023Article
- Comparative Transcriptome Profiling Unfolds a Complex Defense and Secondary Metabolite Networks ImpartingInternational journal of molecular sciences · 2023Article
- Multi-omics assisted breeding for biotic stress resistance in soybean.Molecular biology reports · 2023Review
- Structure, Function, and Applications of Soybean Calcium Transporters.International journal of molecular sciences · 2022Review
- Functional Identification ofBiomolecules · 2022Article
- Molecular Breeding to Overcome Biotic Stresses in Soybean: Update.Plants (Basel, Switzerland) · 2022Review
- PNGSeqR: An R Package for Rapid Candidate Gene Selection through Pooled Next-Generation Sequencing.Plants (Basel, Switzerland) · 2022Article
- Identification of Novel Genomic Regions for Bacterial Leaf Pustule (BLP) Resistance in Soybean (International journal of molecular sciences · 2022Article
- Comparative transcriptomics and eQTL mapping of response to Melampsora americana in selected Salix purpurea FBMC genomics · 2022Article
- Gene Co-expression Network Analysis of the Comparative Transcriptome Identifies Hub Genes Associated With Resistance toFrontiers in plant science · 2022Article
- Identification of Candidate Genes for a Major Quantitative Disease Resistance Locus From Soybean PI 427105B for Resistance toFrontiers in plant science · 2022Article
- Mapping Major Disease Resistance Genes in Soybean by Genome-Wide Association Studies.Methods in molecular biology (Clifton, N.J.) · 2022Review
- Transcriptome and metabolome analysis of stress tolerance to aluminium in Vitis quinquangularis.Planta · 2021Article
- Transcriptomic Analysis Reveals Candidate Genes Responding Maize Gray Leaf Spot Caused byPlants (Basel, Switzerland) · 2021Article
- Molecular interaction of charcoal rot pathogenesis in soybean: a complex interaction.Plant cell reports · 2021Review
- Transcriptomic and photosynthetic responses to grafting of the Nod1 gene in nodulated and non-nodulated soybeans.G3 (Bethesda, Md.) · 2021Article
- An optimized protocol for stepwise optimization of real-time RT-PCR analysis.Horticulture research · 2021Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Bacterial leaf pustule (BLP) disease is caused by Xanthomonas axonopodis pv. glycines (Xag). To investigate the plant basal defence mechanisms induced in response to Xag, differential gene expression in near-isogenic lines (NILs) of BLP-susceptible and BLP-resistant soybean was analysed by RNA-Seq. Of a total of 46 367 genes that were mapped to soybean genome reference sequences, 1978 and 783 genes were found to be up- and down-regulated, respectively, in the BLP-resistant NIL relative to the BLP-susceptible NIL at 0, 6, and 12h after inoculation (hai). Clustering analysis revealed that these genes could be grouped into 10 clusters with different expression patterns. Functional annotation based on gene ontology (GO) categories was carried out. Among the putative soybean defence response genes identified (GO:0006952), 134 exhibited significant differences in expression between the BLP-resistant and -susceptible NILs. In particular, pathogen-associated molecular pattern (PAMP) and damage-associated molecular pattern (DAMP) receptors and the genes induced by these receptors were highly expressed at 0 hai in the BLP-resistant NIL. Additionally, pathogenesis-related (PR)-1 and -14 were highly expressed at 0 hai, and PR-3, -6, and -12 were highly expressed at 12 hai. There were also significant differences in the expression of the core JA-signalling components MYC2 and JASMONATE ZIM-motif. These results indicate that powerful basal defence mechanisms involved in the recognition of PAMPs or DAMPs and a high level of accumulation of defence-related gene products may contribute to BLP resistance in soybean.
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