Evidence map›Paper›PMID 21985762›Full record

ArticleJournal of neuroscience methods2012

Measuring CaMKII concentration in dendritic spines.

Nikolai Otmakhov, John Lisman

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
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  10. Characterization of CaMKIIα holoenzyme stability.Protein science : a publication of the Protein Society · 2020
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Nikolai OtmakhovBiology Department, Brandeis University, 415 South St., Waltham, MA 02454, United States. otmakhov@brandeis.edu
John Lisman

Funding

MECHANISMS OF LONG-TERM POTENTIATIONR01NS027337 · NINDS · BRANDEIS UNIVERSITY · PI LISMAN, JOHN E · 1989 to 2010
$3.7M
CRCNS: Quantitative description of initial biochemical steps in LTPR01DA027807 · NIDA · BRANDEIS UNIVERSITY · PI LISMAN, JOHN E · 2009 to 2013
$1.6M
NIDA NIH HHS R01 DA027807NIDA NIH HHS R01DA027807NINDS NIH HHS R01 NS027337NINDS NIH HHS R01NS27337
6 · The paper itself

Abstract

Here, we present a method for measuring the concentration of endogenous protein in cellular compartments. Importantly, the method is applicable to compartments such as dendritic spines with dimensions often close to the resolution limit of optical microscopy. To our knowledge, a method with such capabilities has not yet been described. The method utilizes overexpression of the protein of interest, which is tagged with fluorescent protein. This is followed by immunostaining of both overexpressed and endogenous proteins. Expression of a volume marker is also required. We applied this method to measure the concentration of Ca/calmodulin kinase II (CaMKII) in different cellular compartments of hippocampal pyramidal neurons. It was found that the concentrations of CaMKIIα subunits in cell bodies, proximal dendrites, and spines on these dendrites are 71, 46, and 103 μM, respectively. Considering the 3:1 ratio of α to β CaMKII subunits in the hippocampus, the concentrations of total (α+β) CaMKII subunits in these compartments are 94, 61, and 138 μM, respectively.

Indexed as

AnimalsCalcium-Calmodulin-Dependent Protein Kinase Type 2Dendritic SpinesElectroporationFluorescent Antibody TechniqueFluorescent DyesImage Processing, Computer-AssistedMicroscopy, ConfocalPyramidal CellsTransfectionVoltage-Sensitive Dye ImagingCalcium-Calmodulin-Dependent Protein Kinase Type 2Fluorescent Dyes

Identifiers

PMID21985762
PMCPMC3221876

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.