Evidence map›Paper›PMID 21985276›Full record

ArticleBMC plant biology2011

Nodulin 41, a novel late nodulin of common bean with peptidase activity.

Juan Elías Olivares, Claudia Díaz-Camino, Georgina Estrada-Navarrete, Xochitl Alvarado-Affantranger, Margarita Rodríguez-Kessler, Fernando Z Zamudio, Timoteo Olamendi-Portugal, Yamile Márquez, Luis Eduardo Servín, Federico Sánchez

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. The rhizobial autotransporter determines the symbiotic nitrogen fixation activity ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Juan Elías OlivaresDepartamento de Biología Molecular de Plantas, Instituto de Biotecnología/Universidad Nacional Autónoma de México, Av Universidad 2001, Cuernavaca, Morelos 62210, México.
Claudia Díaz-Camino
Georgina Estrada-Navarrete
Xochitl Alvarado-Affantranger
Margarita Rodríguez-Kessler
Fernando Z Zamudio
Timoteo Olamendi-Portugal
Yamile Márquez
Luis Eduardo Servín
Federico Sánchez
Universidad Nacional Autónoma de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe legume-rhizobium symbiosis requires the formation of root nodules, specialized organs where the nitrogen fixation process takes place. Nodule development is accompanied by the induction of specific plant genes, referred to as nodulin genes. Important roles in processes such as morphogenesis and metabolism have been assigned to nodulins during the legume-rhizobium symbiosis.

resultsHere we report the purification and biochemical characterization of a novel nodulin from common bean (Phaseolus vulgaris L.) root nodules. This protein, called nodulin 41 (PvNod41) was purified through affinity chromatography and was partially sequenced. A genomic clone was then isolated via PCR amplification. PvNod41 is an atypical aspartyl peptidase of the A1B subfamily with an optimal hydrolytic activity at pH 4.5. We demonstrate that PvNod41 has limited peptidase activity against casein and is partially inhibited by pepstatin A. A PvNod41-specific antiserum was used to assess the expression pattern of this protein in different plant organs and throughout root nodule development, revealing that PvNod41 is found only in bean root nodules and is confined to uninfected cells.

conclusionsTo date, only a small number of atypical aspartyl peptidases have been characterized in plants. Their particular spatial and temporal expression patterns along with their unique enzymatic properties imply a high degree of functional specialization. Indeed, PvNod41 is closely related to CDR1, an Arabidopsis thaliana extracellular aspartyl protease involved in defense against bacterial pathogens. PvNod41's biochemical properties and specific cell-type localization, in uninfected cells of the common bean root nodule, strongly suggest that this aspartyl peptidase has a key role in plant defense during the symbiotic interaction.

Indexed as

Amino Acid SequenceAspartic Acid EndopeptidasesBase SequenceCloning, MolecularMembrane ProteinsMolecular Sequence DataPhaseolusPhylogenyPlant ProteinsRNA, PlantRoot Nodules, PlantSequence AlignmentSequence Analysis, ProteinAspartic Acid EndopeptidasesMembrane ProteinsnodulinPlant ProteinsRNA, Plant

Identifiers

PMID21985276
PMCPMC3207901
OpenAlexW1990960161

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.