Evidence map›Paper›PMID 21983602›Full record

ArticleNature chemical biology2011

Discovery of parallel pathways of kanamycin biosynthesis allows antibiotic manipulation.

Je Won Park, Sung Ryeol Park, Keshav Kumar Nepal, Ah Reum Han, Yeon Hee Ban, Young Ji Yoo, Eun Ji Kim, Eui Min Kim, Dooil Kim, Jae Kyung Sohng and 1 more

Abstract read
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In one paragraph

Article in Nature chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 85 citations in OpenAlex.

  1. Trial
  2. Synthetic and systems biotechnology · 2026
    Review
  3. Article
  4. Article
  5. Glycodiversification of gentamicins throughActa pharmaceutica Sinica. B · 2024
    Article
  6. Article
  7. Article
  8. Facile and selectiveGreen chemistry : an international journal and green chemistry resource : GC · 2022
    Article
  9. Article
  10. Engineering ofMolecules (Basel, Switzerland) · 2021
    Article
  11. Article
  12. Cell-Free Exploration of the Natural Product Chemical Space.Chembiochem : a European journal of chemical biology · 2021
    Review
  13. Article
  14. TheFrontiers in veterinary science · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Je Won ParkDepartment of Chemistry and Nanoscience, Ewha Womans University, Seoul, Republic of Korea.
Sung Ryeol Park
Keshav Kumar Nepal
Ah Reum Han
Yeon Hee Ban
Young Ji Yoo
Eun Ji Kim
Eui Min Kim
Dooil Kim
Jae Kyung Sohng
Yeo Joon Yoon
Sun Moon University · KREwha Womans University · KRKorea Research Institute of Bioscience and Biotechnology · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kanamycin is one of the most widely used antibiotics, yet its biosynthetic pathway remains unclear. Current proposals suggest that the kanamycin biosynthetic products are linearly related via single enzymatic transformations. To explore this system, we have reconstructed the entire biosynthetic pathway through the heterologous expression of combinations of putative biosynthetic genes from Streptomyces kanamyceticus in the non-aminoglycoside-producing Streptomyces venezuelae. Unexpectedly, we discovered that the biosynthetic pathway contains an early branch point, governed by the substrate promiscuity of a glycosyltransferase, that leads to the formation of two parallel pathways in which early intermediates are further modified. Glycosyltransferase exchange can alter flux through these two parallel pathways, and the addition of other biosynthetic enzymes can be used to synthesize known and new highly active antibiotics. These results complete our understanding of kanamycin biosynthesis and demonstrate the potential of pathway engineering for direct in vivo production of clinically useful antibiotics and more robust aminoglycosides.

Indexed as

Genetic EngineeringCell-Free SystemEscherichia coliGene Expression Regulation, BacterialKanamycinMicrobial Sensitivity TestsModels, MolecularMolecular StructureMutationPseudomonas aeruginosaStreptomycesKanamycin

Identifiers

PMID21983602
OpenAlexW1985943607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.