Evidence map›Paper›PMID 21983160›Full record

ArticleMetabolic engineering2011

Identification and engineering of the cytochalasin gene cluster from Aspergillus clavatus NRRL 1.

Kangjian Qiao, Yit-Heng Chooi, Yi Tang

Open access · greenAbstract read
In one paragraph

Article in Metabolic engineering, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 139 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. A Novel ZnMicroorganisms · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Cytochalasans from the Endophytic FungusJournal of fungi (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. Catalytic mechanism andNature catalysis · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kangjian QiaoDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095, USA. qiaokangjian@ucla.edu
Yit-Heng Chooi
Yi Tang
University of California, Los Angeles · US

Funding

Characterization and Engineering of Fungal Megasynthases in Escherichia coliR01GM085128 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TANG, YI · 2008 to 2016
$2.1M
A Robust Platform for Reconstituting and Engineering Iterative MegasynthasesR01GM092217 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TANG, YI · 2010 to 2012
$1.1M
NIGMS NIH HHS 1R01GM085128NIGMS NIH HHS 1R01GM092217NIGMS NIH HHS R01 GM085128NIGMS NIH HHS R01 GM092217
6 · The paper itself

Abstract

Cytochalasins are a group of fungal secondary metabolites with diverse structures and bioactivities, including cytochalasin E produced by Aspergillus clavatus, which is a potent anti-angiogenic agent. Here, we report the identification and characterization of the cytochalasin gene cluster from A. clavatus NRRL 1. As a producer of cytochalasin E and K, the genome of A. clavatus was analyzed and the ∼30 kb ccs gene cluster was identified based on the presence of a polyketide synthase-nonribosomal peptide synthetases (PKS-NRPS) and a putative Baeyer-Villiger monooxygenase (BVMO). Deletion of the central PKS-NRPS gene, ccsA, abolished the production of cytochalasin E and K, confirming the association between the natural products and the gene cluster. Based on bioinformatic analysis, a putative biosynthetic pathway is proposed. Furthermore, overexpression of the pathway specific regulator ccsR elevated the titer of cytochalasin E from 25mg/L to 175 mg/L. Our results not only shed light on the biosynthesis of cytochalasins, but also provided genetic tools for increasing and engineering the production.

Indexed as

Genetic EngineeringMultigene FamilyAspergillusBiosynthetic PathwaysCytochalasinsFungal ProteinsGene DeletionMixed Function OxygenasesPeptide SynthasesUp-Regulationcytochalasin ECytochalasinsFungal ProteinsMixed Function Oxygenasesnon-ribosomal peptide synthasePeptide Synthases

Identifiers

PMID21983160
PMCPMC3254600
OpenAlexW2041324196

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.